RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780233|ref|YP_003064646.1| GTP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
(624 letters)
>gnl|CDD|162336 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA. This
bacterial (and Arabidopsis) protein, termed TypA or
BipA, a GTP-binding protein, is phosphorylated on a
tyrosine residue under some cellular conditions. Mutants
show altered regulation of some pathways, but the
precise function is unknown.
Length = 594
Score = 943 bits (2439), Expect = 0.0
Identities = 368/596 (61%), Positives = 455/596 (76%), Gaps = 3/596 (0%)
Query: 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIV 78
IRNIAIIAHVDHGKTTLVD LLKQSG FR N+ V+ERVMD NDLE+ERGITILAK T+I
Sbjct: 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR 60
Query: 79 WNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPI 138
+N +INIVDTPGHADFGGEVER+L MV+ V++LVDA+EGPMPQT+FV+ KAL++GL+PI
Sbjct: 61 YNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI 120
Query: 139 VVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQGM 198
VV+NK+DR AR DEV++EVFDLF+ L A D QLDFPI+Y SGR GW S D D M
Sbjct: 121 VVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDN-M 179
Query: 199 VPLLNLIVDHVPPPVIS-EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPD 257
PL + IV HVP P + +M+ T L+ D +LGRI GR+H GT+K Q + + D
Sbjct: 180 APLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRD 239
Query: 258 GALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTFCDPSIDEPLKAQPI 317
G + GR+SK+L F G++R IDEA AGDIV++AGL + +T DP + E L +
Sbjct: 240 GTIEN-GRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEVPEALPTITV 298
Query: 318 DPPTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRG 377
D PT++MTF VNDSPLAG EG KVTSR IRDRL +E E N+AL++E++ S D F VSGRG
Sbjct: 299 DEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRG 358
Query: 378 ELQLAVLIETMRREGFELAVSRPRVVIKKEGDSLLEPIEEVVIDVDEEHSGAVVQKMTLH 437
EL L++LIETMRREGFEL V RP+V+ K+ LEPIEE+ IDV EEH GAV++K+
Sbjct: 359 ELHLSILIETMRREGFELQVGRPQVIYKEIDGKKLEPIEELTIDVPEEHVGAVIEKLGKR 418
Query: 438 KSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHKGEIGGR 497
K EM+++ PSG GR RL F P+RGLIG++++ +TDTRGT IMN +F Y+P KGEI R
Sbjct: 419 KGEMVDMEPSGNGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKGEIETR 478
Query: 498 SNGVLLSNEEGKVVAYALFNLEDRGSMIVEPGDKVYQGMIVGIHTRENDLDVNVLKGKKL 557
NG L+S E+G AYAL+NL++RG M V PG +VY+GMI+G H+RENDLDVN K KKL
Sbjct: 479 RNGSLVSMEDGTATAYALWNLQERGVMFVSPGTEVYEGMIIGEHSRENDLDVNPCKAKKL 538
Query: 558 TNMRASGKDEAVKLVPAVKMTLEQALSWIQNDELVEVTPKSIRLRKMYLDPNERKR 613
TN+R+SGKDEAVKL P K++LEQAL +I++DELVEVTPKSIRLRK LDPNERKR
Sbjct: 539 TNVRSSGKDEAVKLTPPRKLSLEQALEYIEDDELVEVTPKSIRLRKRVLDPNERKR 594
>gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional.
Length = 607
Score = 628 bits (1620), Expect = e-180
Identities = 336/606 (55%), Positives = 426/606 (70%), Gaps = 6/606 (0%)
Query: 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIV 78
+RNIAIIAHVDHGKTTLVD+LL+QSG F ERVMD NDLEKERGITILAK T+I
Sbjct: 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIK 64
Query: 79 WNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPI 138
WND RINIVDTPGHADFGGEVER++ MV+SV+++VDA +GPMPQT+FV KA GL+PI
Sbjct: 65 WNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI 124
Query: 139 VVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMS-DSSDGSRDQG 197
VV+NKVDR AR D V+++VFDLF LDATD QLDFPI+Y S G D D + D
Sbjct: 125 VVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAED-- 182
Query: 198 MVPLLNLIVDHVPPPVIS-EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSP 256
M PL IVDHVP P + +G F+M + L+ + ++G I GRI G +K NQ + +
Sbjct: 183 MTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDS 242
Query: 257 DGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTFCDPSIDEPLKAQP 316
+G +V K+L G++R D A AGDIV+I GL + ++DT CD E L A
Sbjct: 243 EGK-TRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALS 301
Query: 317 IDPPTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGR 376
+D PTV+M F VN SP G EG VTSR I DRL KE N+AL++EE+ DAF VSGR
Sbjct: 302 VDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGR 361
Query: 377 GELQLAVLIETMRREGFELAVSRPRVVIKKEGDSLLEPIEEVVIDVDEEHSGAVVQKMTL 436
GEL L+VLIE MRREGFELAVSRP+V+ ++ EP E V +DV+E+H G+V+Q +
Sbjct: 362 GELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGE 421
Query: 437 HKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSYQPHK-GEIG 495
K ++ + P G GRVRL ++ P+RGLIG++S+ MT T GT ++ F Y + GE+G
Sbjct: 422 RKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVG 481
Query: 496 GRSNGVLLSNEEGKVVAYALFNLEDRGSMIVEPGDKVYQGMIVGIHTRENDLDVNVLKGK 555
R NGVL+SN +GK VA+ALF L+DRG + + G +VY+G I+GIH+R NDL VN L GK
Sbjct: 482 QRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGK 541
Query: 556 KLTNMRASGKDEAVKLVPAVKMTLEQALSWIQNDELVEVTPKSIRLRKMYLDPNERKRKG 615
KLTNMRASG DEAV LVP ++MTLEQAL +I +DELVEVTP SIR+RK +L N+R+R
Sbjct: 542 KLTNMRASGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRKRHLTENDRRRAN 601
Query: 616 KSVNLE 621
++ +
Sbjct: 602 RAPKDD 607
>gnl|CDD|181029 PRK07560, PRK07560, elongation factor EF-2; Reviewed.
Length = 731
Score = 187 bits (477), Expect = 8e-48
Identities = 145/508 (28%), Positives = 227/508 (44%), Gaps = 130/508 (25%)
Query: 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSI 77
QIRNI IIAH+DHGKTTL D LL +G+ + + +D ++ E+ RGITI A S+
Sbjct: 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSM 78
Query: 78 VW----NDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKI 133
V + IN++DTPGH DFGG+V R + V+ +V+VDA EG MPQT+ V+ +AL+
Sbjct: 79 VHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE 138
Query: 134 GLRPIVVVNKVDR-----------SDARADEVINEVFDLFSA-----------LDATDAQ 171
++P++ +NKVDR R ++I +V L +D D
Sbjct: 139 RVKPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGT 198
Query: 172 LDFPILYGSGRFGW-------------MSDSSDGSRDQGM------VPL----LNLIVDH 208
+ F GS + W D D PL L+++V H
Sbjct: 199 VAF----GSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKH 254
Query: 209 VPPPVISE--------------------------GEFKMIGTILEKDPFLGRIVTGRIHS 242
+P P+ ++ G M+ T + DP G + TGR+ S
Sbjct: 255 LPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFS 314
Query: 243 GTIKSNQNIKALSPDGALVEVGRVSKILA---FRGIDRQPIDEAHAGDIVSIAGLVKATV 299
GT++ Q + LV + +++ + G +R+ ++E AG+I ++ GL A
Sbjct: 315 GTLRKGQEVY-------LVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDARA 367
Query: 300 ADTFCDPSIDEPLKA-QPIDPPTVTMTF---GVNDSPLAGTEGDKVTSRMI---RDRLFK 352
+T P ++ + I P VT+ D P ++I R L K
Sbjct: 368 GETVVSVEDMTPFESLKHISEPVVTVAIEAKNPKDLP-----------KLIEVLRQ-LAK 415
Query: 353 EAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRRE-GFELAVSRPRVV----IKK- 406
E + + +KI E + + +SG GEL L V+ ++R+ G E+ S P VV ++
Sbjct: 416 E-DPTLVVKINEETGE--HLLSGMGELHLEVITYRIKRDYGIEVVTSEPIVVYRETVRGK 472
Query: 407 ----EGDS---------LLEPIEEVVID 421
EG S +EP+EE VI+
Sbjct: 473 SQVVEGKSPNKHNRFYISVEPLEEEVIE 500
Score = 36.4 bits (85), Expect = 0.022
Identities = 19/82 (23%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 408 GDSLLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQ 467
+LLEPI++V I+V +++ GAV +++ + +++++ G + +P + G+
Sbjct: 620 KPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEGD-MAIIEAEAPVAEMFGFA 678
Query: 468 SQLMTDTRGTAIMNRLFHSYQP 489
++ + T G A+ + F ++P
Sbjct: 679 GEIRSATEGRALWSTEFAGFEP 700
>gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2. This model
represents archaeal elongation factor 2, a protein more
similar to eukaryotic EF-2 than to bacterial EF-G, both
in sequence similarity and in sharing with eukaryotes
the property of having a diphthamide (modified His)
residue at a conserved position. The diphthamide can be
ADP-ribosylated by diphtheria toxin in the presence of
NAD.
Length = 720
Score = 180 bits (459), Expect = 8e-46
Identities = 143/521 (27%), Positives = 238/521 (45%), Gaps = 108/521 (20%)
Query: 16 YMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVT 75
IRNI I+AH+DHGKTTL D LL +G+ + + +D ++ E+ERGITI A
Sbjct: 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANV 75
Query: 76 SIVW----NDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKAL 131
S+V N+ IN++DTPGH DFGG+V R + V+ +V+V A EG MPQT+ V+ +AL
Sbjct: 76 SMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQAL 135
Query: 132 KIGLRPIVVVNKVDR-----------SDARADEVINEVFDLFSALDATDAQ-------LD 173
K ++P++ +NKVDR R ++I EV L A+ + + D
Sbjct: 136 KENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVED 195
Query: 174 FPILYGSGRFGW------MSDSSDGSRD-------------QGMVPL----LNLIVDHVP 210
+ +GS + W M + G +D PL L++++ H+P
Sbjct: 196 GSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHLP 255
Query: 211 PPVIS--------------------------EGEFKMIGTILEKDPFLGRIVTGRIHSGT 244
P+ + +G ++ T + D G + GR++SGT
Sbjct: 256 SPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGT 315
Query: 245 IKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTFC 304
I+ + + R+ ++ + G +R +DE AG+IV++ GL A +T C
Sbjct: 316 IRPGMEVYIVDRKAK----ARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDAVAGETIC 371
Query: 305 DP-SIDEPLKA-QPIDPPTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKI 362
P ++ + I P VT+ ++ K ++I + L + A+ + + +
Sbjct: 372 TTVENITPFESIKHISEPVVTVAIEAKNT--------KDLPKLI-EVLRQVAKEDPTVHV 422
Query: 363 EESSSKDAFFVSGRGELQLAVLIETMRRE-GFELAVSRPRVVIKK---------EGDS-- 410
E + +SG GEL L +++E +R + G ++ S P VV ++ EG S
Sbjct: 423 EINEETGEHLISGMGELHLEIIVEKIREDYGLDVETSPPIVVYRETVTGTSPVVEGKSPN 482
Query: 411 -------LLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIEL 444
++EP+EE VI +E + M + K E L
Sbjct: 483 KHNRFYIVVEPLEESVIQAFKE---GKIVDMKMKKKERRRL 520
Score = 30.3 bits (68), Expect = 1.7
Identities = 16/78 (20%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 411 LLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQL 470
LLEP ++V I+V ++ GA +++ + +++E++ G V ++ +P + G+ +
Sbjct: 621 LLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQEGD-MVTIIAKAPVAEMFGFAGAI 679
Query: 471 MTDTRGTAIMNRLFHSYQ 488
T G + + ++
Sbjct: 680 RGATSGRCLWSTEHAGFE 697
>gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA. LepA (GUF1 in
Saccaromyces) is a GTP-binding membrane protein related
to EF-G and EF-Tu. Two types of phylogenetic tree,
rooted by other GTP-binding proteins, suggest that
eukaryotic homologs (including GUF1 of yeast) originated
within the bacterial LepA family. The function is
unknown.
Length = 595
Score = 160 bits (406), Expect = 1e-39
Identities = 143/512 (27%), Positives = 218/512 (42%), Gaps = 76/512 (14%)
Query: 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSI 77
IRN +IIAH+DHGK+TL D LL+ +G + + + E+V+D DLE+ERGITI A+ +
Sbjct: 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISERE-MREQVLDSMDLERERGITIKAQAVRL 60
Query: 78 VW-----NDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALK 132
+ +N++DTPGH DF EV R L E ++LVDAA+G QT V AL+
Sbjct: 61 NYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE 120
Query: 133 IGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDG 192
L I V+NK+D A + V E+ ++ LDA++A L S + G
Sbjct: 121 NDLEIIPVINKIDLPSADPERVKKEIEEVI-GLDASEAIL------ASAKTG-------- 165
Query: 193 SRDQGMVPLLNLIVDHVPPPVISEGEFKMIGTILEK--DPFLGRIVTGRIHSGTIKSNQN 250
G+ +L IV VPPP + + + I + D + G + R+ GTIK
Sbjct: 166 ---IGIEEILEAIVKRVPPP-KGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDK 221
Query: 251 IKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAGLVK----ATVADTF--C 304
I+ +S G EV V DE AG++ I +K V DT
Sbjct: 222 IRFMS-TGKEYEVDEV----GVFTPKLTKTDELSAGEVGYIIAGIKDVSDVRVGDTITHV 276
Query: 305 DPSIDEPLKA-QPIDPPTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKEAEGNIALKIE 363
EPL + + P M F + L + + +RD L K + +L E
Sbjct: 277 KNPAKEPLPGFKEVKP----MVF----AGLYPIDTEDYED--LRDALEKLKLNDASLTYE 326
Query: 364 ESSSKD---AFFVSGRGELQLAVLIETMRREGFELAV--SRPRV---VIKKEG------- 408
SS F G L + ++ E + RE F L + + P V V G
Sbjct: 327 PESSPALGFGFRCGFLGLLHMEIIQERLERE-FNLDLITTAPSVIYRVYLTNGEVIEVDN 385
Query: 409 ----------DSLLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLS 458
+ + EP + I E+ G ++ + + RV L++
Sbjct: 386 PSDLPDPGKIEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDPNRVELIYEM 445
Query: 459 P-TRGLIGYQSQLMTDTRGTAIMNRLFHSYQP 489
P + + +L + +RG A + Y+P
Sbjct: 446 PLAEIVYDFFDKLKSISRGYASFDYELIGYRP 477
>gnl|CDD|180078 PRK05433, PRK05433, GTP-binding protein LepA; Provisional.
Length = 600
Score = 146 bits (371), Expect = 2e-35
Identities = 108/331 (32%), Positives = 153/331 (46%), Gaps = 74/331 (22%)
Query: 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSER-----VMDCNDLEKERGITILAK 73
IRN +IIAH+DHGK+TL D L++ +G +SER V+D DLE+ERGITI A+
Sbjct: 7 IRNFSIIAHIDHGKSTLADRLIELTGT------LSEREMKAQVLDSMDLERERGITIKAQ 60
Query: 74 VTSIVW-----NDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVG 128
+ + +N++DTPGH DF EV R L E +++VDA++G QT V
Sbjct: 61 AVRLNYKAKDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 120
Query: 129 KALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSD 188
AL+ L I V+NK+D A + V E+ D+ +DA+DA L S + G
Sbjct: 121 LALENDLEIIPVLNKIDLPAADPERVKQEIEDVI-GIDASDAVL------VSAKTG---- 169
Query: 189 SSDGSRDQGMVPLLNLIVDHVPPPVISEGEFKMIGTILEK----------DPFLGRIVTG 238
G+ +L IV+ +PPP G D + G +V
Sbjct: 170 -------IGIEEVLEAIVERIPPPK---------GDPDAPLKALIFDSWYDNYRGVVVLV 213
Query: 239 RIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGI---DRQPIDEAHAGD----IVSI 291
R+ GT+K IK +S G EV V G+ P+DE AG+ I I
Sbjct: 214 RVVDGTLKKGDKIKMMS-TGKEYEVDEV-------GVFTPKMVPVDELSAGEVGYIIAGI 265
Query: 292 AGLVKATVADTFCDPS--IDEPL----KAQP 316
+ A V DT +EPL + +P
Sbjct: 266 KDVRDARVGDTITLAKNPAEEPLPGFKEVKP 296
>gnl|CDD|183990 PRK13351, PRK13351, elongation factor G; Reviewed.
Length = 687
Score = 133 bits (337), Expect = 1e-31
Identities = 64/150 (42%), Positives = 93/150 (62%), Gaps = 2/150 (1%)
Query: 17 MQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE--RVMDCNDLEKERGITILAKV 74
MQIRNI I+AH+D GKTTL + +L +G V + V D E+ERGITI +
Sbjct: 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAA 65
Query: 75 TSIVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIG 134
TS W++ RIN++DTPGH DF GEVER L +++ VV+ DA G PQT+ V +A + G
Sbjct: 66 TSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYG 125
Query: 135 LRPIVVVNKVDRSDARADEVINEVFDLFSA 164
+ ++ +NK+DR A +V+ ++ + F
Sbjct: 126 IPRLIFINKMDRVGADLFKVLEDIEERFGK 155
Score = 83.8 bits (208), Expect = 1e-16
Identities = 64/250 (25%), Positives = 111/250 (44%), Gaps = 44/250 (17%)
Query: 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDH------VPPPVISEGEFKMI----- 222
P+L+GS ++ G+ PLL+ +VD+ VPPP S+ K +
Sbjct: 253 VPVLFGSAL-----------KNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPD 301
Query: 223 --GTIL------EKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRG 274
+L + DP+ G++ R++SGT+++ L +V ++ +G
Sbjct: 302 PEKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAG---SQLYNGTGGKRE-KVGRLFRLQG 357
Query: 275 IDRQPIDEAHAGDIVSIAGLVKATVADTFCDPSIDEPLKAQPIDPPTVTMTFGVNDSPLA 334
R+ +D A AGDIV++AGL + DT D +P+ + + P + P
Sbjct: 358 NKREEVDRAKAGDIVAVAGLKELETGDTLHDS--ADPVLLELLTFP--EPVVSLAVEPER 413
Query: 335 GTEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRRE-GF 393
+ K+ + ++L E L++EE +SG GEL L V +E +RRE
Sbjct: 414 RGDEQKLAEAL--EKLVWEDPS---LRVEEDEETGQTILSGMGELHLEVALERLRREFKL 468
Query: 394 ELAVSRPRVV 403
E+ +P+V
Sbjct: 469 EVNTGKPQVA 478
Score = 38.0 bits (89), Expect = 0.008
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 404 IKKEGDSLLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGL 463
+K LLEPI E+ I V EH G V+ ++ + + P G G V + +P L
Sbjct: 590 FRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDGEVLVKAEAPLAEL 649
Query: 464 IGYQSQL--MTDTRGTAIM 480
GY ++L MT RG+ M
Sbjct: 650 FGYATRLRSMTKGRGSFTM 668
>gnl|CDD|185604 PTZ00416, PTZ00416, elongation factor 2; Provisional.
Length = 836
Score = 124 bits (314), Expect = 6e-29
Identities = 67/198 (33%), Positives = 100/198 (50%), Gaps = 33/198 (16%)
Query: 18 QIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSI 77
QIRN+++IAHVDHGK+TL D L+ ++G+ R D E+ERGITI K T I
Sbjct: 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITI--KSTGI 75
Query: 78 ------------VWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKF 125
IN++D+PGH DF EV L + + +V+VD EG QT+
Sbjct: 76 SLYYEHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTET 135
Query: 126 VVGKALKIGLRPIVVVNKVDR--------------SDARADEVINEVFDLFSALDATDAQ 171
V+ +AL+ +RP++ +NKVDR + + E +N + ++ D Q
Sbjct: 136 VLRQALQERIRPVLFINKVDRAILELQLDPEEIYQNFVKTIENVNVIIATYNDELMGDVQ 195
Query: 172 LDFP----ILYGSGRFGW 185
+ P + +GSG GW
Sbjct: 196 VY-PEKGTVAFGSGLQGW 212
>gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G. After peptide
bond formation, this elongation factor of bacteria and
organelles catalyzes the translocation of the tRNA-mRNA
complex, with its attached nascent polypeptide chain,
from the A-site to the P-site of the ribosome. Every
completed bacterial genome has at least one copy, but
some species have additional EF-G-like proteins. The
closest homolog to canonical (e.g. E. coli) EF-G in the
spirochetes clusters as if it is derived from
mitochondrial forms, while a more distant second copy is
also present. Synechocystis PCC6803 has a few proteins
more closely related to EF-G than to any other
characterized protein. Two of these resemble E. coli
EF-G more closely than does the best match from the
spirochetes; it may be that both function as authentic
EF-G.
Length = 689
Score = 119 bits (299), Expect = 3e-27
Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 5/163 (3%)
Query: 16 YMQIRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRV--SERVMDCNDLEKERGITILAK 73
+ RNI I AH+D GKTT + +L +G V MD + EKERGITI +
Sbjct: 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSA 66
Query: 74 VTSIVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKI 133
T++ W RINI+DTPGH DF EVER L +++ V ++DA G PQ++ V +A +
Sbjct: 67 ATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY 126
Query: 134 GLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176
+ I VNK+D++ A V+N+ + L A + PI
Sbjct: 127 EVPRIAFVNKMDKTGANFLRVVNQ---IKQRLGANAVPIQLPI 166
Score = 79.5 bits (196), Expect = 3e-15
Identities = 58/230 (25%), Positives = 97/230 (42%), Gaps = 34/230 (14%)
Query: 194 RDQGMVPLLNLIVDHVPPPV--------------------ISEGEFKMIGTILEKDPFLG 233
+++G+ LL+ +VD++P P + F + + DPF+G
Sbjct: 263 KNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFVG 322
Query: 234 RIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSIAG 293
++ R++SG +KS +K + RV +++ +R+ I E AGDI + G
Sbjct: 323 QLTFVRVYSGVLKSGSYVKNSRKNKKE----RVGRLVKMHANNREEIKEVRAGDICAAIG 378
Query: 294 LVKATVADTFCDPSIDEPLKAQPIDPPTVTMTFGVNDSPLAGTEGDKVTSRMIRDRLFKE 353
L T DT CDP ID L+ P ++ LA K + L K
Sbjct: 379 LKDTTTGDTLCDPKIDVILERMEFPEPVIS---------LAVEPKTKADQEKMGIALGKL 429
Query: 354 AEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRRE-GFELAVSRPRV 402
AE + + ++G GEL L ++++ M+RE E V P+V
Sbjct: 430 AEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANVGAPQV 479
Score = 27.9 bits (62), Expect = 8.1
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 393 FELAVSRP-RVVIKKEGDSLLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGR 451
F+LA S + KK LLEPI +V ++V EE+ G V+ ++ + +IE +
Sbjct: 579 FKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRG-IIEGMEARGNV 637
Query: 452 VRLVFLSPTRGLIGYQSQLMTDTRGTAIMNRLFHSY 487
++ P + GY + L + T+G + F Y
Sbjct: 638 QKIKAEVPLSEMFGYATDLRSFTQGRGTYSMEFLHY 673
>gnl|CDD|183713 PRK12740, PRK12740, elongation factor G; Reviewed.
Length = 668
Score = 119 bits (300), Expect = 3e-27
Identities = 55/142 (38%), Positives = 81/142 (57%), Gaps = 2/142 (1%)
Query: 25 IAHVDHGKTTLVDELLKQSGVFRDNQRVSE--RVMDCNDLEKERGITILAKVTSIVWNDV 82
+ H GKTTL + +L +G V + MD E+ERGI+I + T+ W
Sbjct: 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGH 60
Query: 83 RINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVVVN 142
+IN++DTPGH DF GEVER L +++ VV+V A G PQT+ V +A K G+ I+ VN
Sbjct: 61 KINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVN 120
Query: 143 KVDRSDARADEVINEVFDLFSA 164
K+DR+ A V+ ++ + A
Sbjct: 121 KMDRAGADFFRVLAQLQEKLGA 142
Score = 91.3 bits (228), Expect = 6e-19
Identities = 64/249 (25%), Positives = 113/249 (45%), Gaps = 43/249 (17%)
Query: 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPV-------ISEGEFKMIGTIL 226
P+ GS +++G+ LL+ +VD++P P+ E +
Sbjct: 237 VPVFCGSAL-----------KNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDP 285
Query: 227 EK-----------DPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGI 275
+ DPF+G++ R++SGT+K + + E RV ++ G
Sbjct: 286 DGPLVALVFKTMDDPFVGKLSLVRVYSGTLKKGDTL--YNSGTGKKE--RVGRLYRMHGK 341
Query: 276 DRQPIDEAHAGDIVSIAGLVKATVADTFCDPSIDEPLKAQPIDPPTVTMTFGVNDSPLAG 335
R+ +DEA AGDIV++A L A DT CD +P+ +P++ P ++ + P
Sbjct: 342 QREEVDEAVAGDIVAVAKLKDAATGDTLCDK--GDPILLEPMEFPEPVISLAI--EPKDK 397
Query: 336 TEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMRRE-GFE 394
+ +K++ + +L AE + L++E +SG GEL L V +E ++RE G E
Sbjct: 398 GDEEKLSEAL--GKL---AEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVE 452
Query: 395 LAVSRPRVV 403
+ P+V
Sbjct: 453 VETGPPQVP 461
Score = 34.7 bits (81), Expect = 0.068
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 411 LLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQL 470
LLEPI +V + V EE G V+ ++ + ++ + G G + P + GY + L
Sbjct: 580 LLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGGG-DVVRAEVPLAEMFGYATDL 638
Query: 471 MTDTRGTAIMNRLFHSYQP 489
+ T+G + F Y+
Sbjct: 639 RSLTQGRGSFSMEFSHYEE 657
>gnl|CDD|183712 PRK12739, PRK12739, elongation factor G; Reviewed.
Length = 691
Score = 114 bits (288), Expect = 7e-26
Identities = 64/163 (39%), Positives = 90/163 (55%), Gaps = 11/163 (6%)
Query: 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE-----RVMDCNDLEKERGITILAK 73
RNI I+AH+D GKTT + +L +G + ++ E MD + E+ERGITI +
Sbjct: 8 TRNIGIMAHIDAGKTTTTERILYYTGK---SHKIGEVHDGAATMDWMEQEQERGITITSA 64
Query: 74 VTSIVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKI 133
T+ W RINI+DTPGH DF EVER L +++ V + DA G PQ++ V +A K
Sbjct: 65 ATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY 124
Query: 134 GLRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPI 176
G+ IV VNK+DR A + ++ D L A + PI
Sbjct: 125 GVPRIVFVNKMDRIGADFFRSVEQIKDR---LGANAVPIQLPI 164
Score = 65.2 bits (160), Expect = 4e-11
Identities = 70/274 (25%), Positives = 112/274 (40%), Gaps = 93/274 (33%)
Query: 174 FPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPV----------ISEGE----- 218
FP+L GS F +++G+ PLL+ +VD++P P+ +E E
Sbjct: 253 FPVLCGSA-F----------KNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPA 301
Query: 219 ----------FKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSK 268
FK I T DPF+GR+ R++SG ++S + + + R+ +
Sbjct: 302 SDDEPFAALAFK-IMT----DPFVGRLTFFRVYSGVLESGSYVLNTTKG----KKERIGR 352
Query: 269 ILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTFCDP-------SID--EPLKAQPIDP 319
+L R+ I E +AGDI + GL T DT CD S++ EP+ + ++P
Sbjct: 353 LLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCDEKAPIILESMEFPEPVISLAVEP 412
Query: 320 PTVT----MTFGVNDSPLAG------TEGDKVTSRMIRDRLFKEAEGNIALKIEESSSKD 369
T M + LA E D+ T + I
Sbjct: 413 KTKADQDKMGLAL--QKLAEEDPTFRVETDEETGQTI----------------------- 447
Query: 370 AFFVSGRGELQLAVLIETMRRE-GFELAVSRPRV 402
+SG GEL L ++++ M+RE E V P+V
Sbjct: 448 ---ISGMGELHLDIIVDRMKREFKVEANVGAPQV 478
Score = 32.9 bits (76), Expect = 0.24
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 393 FELAVSRP-RVVIKKEGDSLLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGR 451
F++A S + KK G +LEPI +V + EE+ G V+ + + ++ + G +
Sbjct: 579 FKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGGAQ 638
Query: 452 V--RLVFLSPTRGLIGYQSQL--MTDTRGTAIMNRLFHSYQP 489
+ V LS + GY + L T R T M F Y+
Sbjct: 639 IVKAFVPLSE---MFGYATDLRSATQGRATFSME--FDHYEE 675
>gnl|CDD|178789 PRK00007, PRK00007, elongation factor G; Reviewed.
Length = 693
Score = 110 bits (278), Expect = 1e-24
Identities = 60/135 (44%), Positives = 82/135 (60%), Gaps = 8/135 (5%)
Query: 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSE-----RVMDCNDLEKERGITILAKV 74
RNI I+AH+D GKTT + +L +GV N ++ E MD + E+ERGITI +
Sbjct: 11 RNIGIMAHIDAGKTTTTERILFYTGV---NHKIGEVHDGAATMDWMEQEQERGITITSAA 67
Query: 75 TSIVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIG 134
T+ W D RINI+DTPGH DF EVER L +++ V + DA G PQ++ V +A K
Sbjct: 68 TTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYK 127
Query: 135 LRPIVVVNKVDRSDA 149
+ I VNK+DR+ A
Sbjct: 128 VPRIAFVNKMDRTGA 142
Score = 58.2 bits (142), Expect = 7e-09
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 20/87 (22%)
Query: 229 DPFLGRIVTGRIHSGTIKSNQNIKALSPDGALV--------EVGRVSKILAFRGIDRQPI 280
DPF+G++ R++SG ++S G+ V E R+ +IL R+ I
Sbjct: 320 DPFVGKLTFFRVYSGVLES----------GSYVLNSTKGKKE--RIGRILQMHANKREEI 367
Query: 281 DEAHAGDIVSIAGLVKATVADTFCDPS 307
E AGDI + GL T DT CD
Sbjct: 368 KEVRAGDIAAAVGLKDTTTGDTLCDEK 394
Score = 28.6 bits (65), Expect = 5.6
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 374 SGRGELQLAVLIETMRRE-GFELAVSRPRV 402
+G GEL L ++++ M+RE E V +P+V
Sbjct: 452 AGMGELHLDIIVDRMKREFKVEANVGKPQV 481
>gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit;
Provisional.
Length = 843
Score = 107 bits (270), Expect = 7e-24
Identities = 57/146 (39%), Positives = 80/146 (54%), Gaps = 20/146 (13%)
Query: 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIV 78
IRN+++IAHVDHGK+TL D L+ +G+ R+ D E ERGITI K T I
Sbjct: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITI--KSTGIS 76
Query: 79 W------------------NDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPM 120
N+ IN++D+PGH DF EV L + + +V+VD EG
Sbjct: 77 LYYEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
Query: 121 PQTKFVVGKALKIGLRPIVVVNKVDR 146
QT+ V+ +AL +RP++ VNK+DR
Sbjct: 137 VQTETVLRQALGERIRPVLTVNKMDR 162
>gnl|CDD|179105 PRK00741, prfC, peptide chain release factor 3; Provisional.
Length = 526
Score = 90.2 bits (225), Expect = 1e-18
Identities = 55/149 (36%), Positives = 84/149 (56%), Gaps = 14/149 (9%)
Query: 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSER------VMDCNDLEKERGITILAK 73
R AII+H D GKTTL ++LL G ++ V R D ++EK+RGI++ +
Sbjct: 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSS 70
Query: 74 VTSIVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTK--FVVGKAL 131
V + D IN++DTPGH DF + R L V+S ++++DAA+G PQT+ V +
Sbjct: 71 VMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR 130
Query: 132 KIGLRPIVV-VNKVDRSDARAD-EVINEV 158
PI +NK+DR D R E+++E+
Sbjct: 131 DT---PIFTFINKLDR-DGREPLELLDEI 155
>gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB.
In prokaryotes, the incorporation of selenocysteine as
the 21st amino acid, encoded by TGA, requires several
elements: SelC is the tRNA itself, SelD acts as a donor
of reduced selenium, SelA modifies a serine residue on
SelC into selenocysteine, and SelB is a
selenocysteine-specific translation elongation factor.
3-prime or 5-prime non-coding elements of mRNA have been
found as probable structures for directing
selenocysteine incorporation. This model describes the
elongation factor SelB, a close homolog rf EF-Tu. It may
function by replacing EF-Tu. A C-terminal domain not
found in EF-Tu is in all SelB sequences in the seed
alignment except that from Methanococcus jannaschii.
This model does not find an equivalent protein for
eukaryotes.
Length = 581
Score = 86.9 bits (215), Expect = 2e-17
Identities = 80/306 (26%), Positives = 121/306 (39%), Gaps = 60/306 (19%)
Query: 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWN 80
IA HVDHGKTTL+ L +G+ R+ E EK+RG+TI
Sbjct: 2 IIATAGHVDHGKTTLLKAL---TGI--AADRLPE--------EKKRGMTIDLGFAYFPLP 48
Query: 81 DVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTK--FVVGKALKIGLRPI 138
D R+ +D PGH F +++ +++VDA EG M QT V L I I
Sbjct: 49 DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHT-I 107
Query: 139 VVVNKVDRSD-ARADEVINEVFD-LFSALDATDAQLDFPILYGSGR--------FGWMSD 188
VV+ K DR + + L S + +A++ F +G+ + +
Sbjct: 108 VVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKI-FKTSAKTGQGIGELKKELKNLLE 166
Query: 189 SSDGSRDQGMVPLLNLIVDHVPPPVISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSN 248
S D R Q L + +D FK+ G G +VTG SG +K
Sbjct: 167 SLDIKRIQKP---LRMAIDRA---------FKVKGA--------GTVVTGTAFSGEVKVG 206
Query: 249 QNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVS--IAGLVKATVADTFCDP 306
N++ L P V RV I A Q ++ A+AG ++ + + ++
Sbjct: 207 DNLR-LLPINHEV---RVKAIQAQ----NQDVEIAYAGQRIALNLMDVEPESLKRGLL-- 256
Query: 307 SIDEPL 312
I P
Sbjct: 257 -ILTPE 261
>gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3. This translation
releasing factor, RF-3 (prfC) was originally described
as stop codon-independent, in contrast to peptide chain
release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and
RF-2 are closely related to each other, while RF-3 is
similar to elongation factors EF-Tu and EF-G; RF-1 is
active at UAA and UAG and RF-2 is active at UAA and UGA.
More recently, RF-3 was shown to be active primarily at
UGA stop codons in E. coli. All bacteria and organelles
have RF-1. The Mycoplasmas and organelles, which
translate UGA as Trp rather than as a stop codon, lack
RF-2. RF-3, in contrast, seems to be rare among bacteria
and is found so far only in Escherichia coli and some
other gamma subdivision Proteobacteria, in Synechocystis
PCC6803, and in Staphylococcus aureus.
Length = 527
Score = 83.8 bits (207), Expect = 1e-16
Identities = 48/146 (32%), Positives = 82/146 (56%), Gaps = 8/146 (5%)
Query: 20 RNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSER------VMDCNDLEKERGITILAK 73
R AII+H D GKTT+ +++L G + V R D ++EK+RGI+I
Sbjct: 12 RTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTS 71
Query: 74 VTSIVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKI 133
V + D +N++DTPGH DF + R L V++ ++++DAA+G +T+ ++ + ++
Sbjct: 72 VMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLM-EVTRL 130
Query: 134 GLRPIVV-VNKVDRSDARADEVINEV 158
PI +NK+DR E+++EV
Sbjct: 131 RDTPIFTFMNKLDRDIRDPLELLDEV 156
Score = 31.4 bits (71), Expect = 0.68
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 265 RVSKILAFRGIDRQPIDEAHAGDIVSIAGLVKATVADTFCDPSIDEPLKAQPI 317
+S L F DR+ ++EA+AGDI+ + + DTF + E +K I
Sbjct: 339 VISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTF---TQGEKIKFTGI 388
>gnl|CDD|183709 PRK12736, PRK12736, elongation factor Tu; Reviewed.
Length = 394
Score = 81.5 bits (202), Expect = 5e-16
Identities = 86/307 (28%), Positives = 132/307 (42%), Gaps = 87/307 (28%)
Query: 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWN 80
NI I HVDHGKTTL + K NQ +D EKERGITI
Sbjct: 14 NIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITI---------- 63
Query: 81 DVRINI--------------VDTPGHADFGGEVERILCMV------ESVVVLVDAAEGPM 120
N VD PGHAD+ + M+ + +++V A +GPM
Sbjct: 64 ----NTAHVEYETEKRHYAHVDCPGHADY------VKNMITGAAQMDGAILVVAATDGPM 113
Query: 121 PQTKFVVGKALKIGLRPIVV-VNKVDRSDARADEVIN----EVFDLFSALD-ATDAQLDF 174
PQT+ + A ++G+ +VV +NKVD D +E++ EV +L S D D D
Sbjct: 114 PQTREHILLARQVGVPYLVVFLNKVDLVD--DEELLELVEMEVRELLSEYDFPGD---DI 168
Query: 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVISEGEFKMIGTILEKDPFL-- 232
P++ GS + D + ++ L++ + +++P P +K PFL
Sbjct: 169 PVIRGSAL---KALEGDPKWEDAIMELMDAVDEYIPTPERD----------TDK-PFLMP 214
Query: 233 ----------GRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGID--RQPI 280
G +VTGR+ GT+K ++ +V + K + G++ R+ +
Sbjct: 215 VEDVFTITGRGTVVTGRVERGTVKVGDEVE-------IVGIKETQKTVV-TGVEMFRKLL 266
Query: 281 DEAHAGD 287
DE AGD
Sbjct: 267 DEGQAGD 273
>gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU. This alignment
models orthologs of translation elongation factor EF-Tu
in bacteria, mitochondria, and chloroplasts, one of
several GTP-binding translation factors found by the
more general pfam model GTP_EFTU. The eukaryotic
conterpart, eukaryotic translation elongation factor 1
(eEF-1 alpha), is excluded from this model. EF-Tu is one
of the most abundant proteins in bacteria, as well as
one of the most highly conserved, and in a number of
species the gene is duplicated with identical function.
When bound to GTP, EF-Tu can form a complex with any
(correctly) aminoacylated tRNA except those for
initiation and for selenocysteine, in which case EF-Tu
is replaced by other factors. Transfer RNA is carried to
the ribosome in these complexes for protein translation.
Length = 394
Score = 80.2 bits (198), Expect = 2e-15
Identities = 83/297 (27%), Positives = 129/297 (43%), Gaps = 59/297 (19%)
Query: 21 NIAIIAHVDHGKTTLVDEL-----LKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVT 75
NI I HVDHGKTTL + + R ++ D EK RGITI
Sbjct: 14 NIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQI-----DNAPEEKARGITINTAHV 68
Query: 76 SIVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGL 135
+ VD PGHAD+ + ++ +++V A +GPMPQT+ + A ++G+
Sbjct: 69 EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGV 128
Query: 136 RPIVV-VNKVDRSDARADE-----VINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDS 189
IVV +NK D D DE V EV +L S D D PI+ GS +
Sbjct: 129 PYIVVFLNKCDMVD---DEELLELVEMEVRELLSEYDFPGD--DTPIIRGS---ALKALE 180
Query: 190 SDGSRDQGMVPLLNLIVDHVPPPVISEGEFKMIGTILEKDPFL------------GRIVT 237
D + ++ L++ + +++P P +K PFL G +VT
Sbjct: 181 GDAEWEAKILELMDAVDEYIPTPE----------RETDK-PFLMPIEDVFSITGRGTVVT 229
Query: 238 GRIHSGTIKSNQNIKALSPDGALVEVG-RVSKILAFRGID--RQPIDEAHAGDIVSI 291
GR+ G +K + ++ VG + ++ G++ R+ +DE AGD V +
Sbjct: 230 GRVERGIVKVGEEVEI---------VGLKDTRKTTVTGVEMFRKELDEGRAGDNVGL 277
>gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional.
Length = 447
Score = 78.7 bits (194), Expect = 4e-15
Identities = 84/286 (29%), Positives = 131/286 (45%), Gaps = 37/286 (12%)
Query: 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWN 80
N+ I HVDHGKTTL + K + V+ +D EK RGITI
Sbjct: 63 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA 122
Query: 81 DVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVV 140
VD PGHAD+ + ++ +++V A +GPMPQTK + A ++G+ +VV
Sbjct: 123 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVV 182
Query: 141 -VNKVDRSDARA--DEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSRDQG 197
+NKVD D + V E+ +L S + PI+ GS + ++D
Sbjct: 183 FLNKVDVVDDEELLELVEMELRELLSFYKFPGD--EIPIIRGSA-LSALQGTNDEIGKNA 239
Query: 198 MVPLLNLIVDHVPPPVISEGEFKMIGTILEKDPFL------------GRIVTGRIHSGTI 245
++ L++ + +++P PV +L+K PFL G + TGR+ GTI
Sbjct: 240 ILKLMDAVDEYIPEPV----------RVLDK-PFLMPIEDVFSIQGRGTVATGRVEQGTI 288
Query: 246 KSNQNIK--ALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIV 289
K + ++ L P G L V+ + F+ I +D+ AGD V
Sbjct: 289 KVGEEVEIVGLRPGGPLKTT--VTGVEMFKKI----LDQGQAGDNV 328
>gnl|CDD|183433 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed.
Length = 425
Score = 76.1 bits (188), Expect = 2e-14
Identities = 57/172 (33%), Positives = 78/172 (45%), Gaps = 33/172 (19%)
Query: 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSER---------------VMDCNDLEKE 65
N+A+I HVDHGK+TLV LL ++G ++ R VMD E+E
Sbjct: 8 NLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERE 67
Query: 66 RGITILAKVTSIVWNDVRINIVDTPGHADFGGEVERILCMVES--------VVVLVDAAE 117
RG+TI + IVD PGH DF + M+ +VV D A
Sbjct: 68 RGVTIDLAHKKFETDKYYFTIVDCPGHRDF------VKNMITGASQADAAVLVVAADDAG 121
Query: 118 GPMPQTKFVVGKALKIGLRP-IVVVNKVDRSD---ARADEVINEVFDLFSAL 165
G MPQT+ V A +G+ IV +NK+D + R +EV EV L +
Sbjct: 122 GVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMV 173
>gnl|CDD|178823 PRK00049, PRK00049, elongation factor Tu; Reviewed.
Length = 396
Score = 74.5 bits (184), Expect = 8e-14
Identities = 76/270 (28%), Positives = 111/270 (41%), Gaps = 77/270 (28%)
Query: 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWN 80
N+ I HVDHGKTTL + K + + +D EK RGITI
Sbjct: 14 NVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITI---------- 63
Query: 81 DVRINI--------------VDTPGHADFGGEVERILCMV------ESVVVLVDAAEGPM 120
N VD PGHAD+ + M+ + +++V AA+GPM
Sbjct: 64 ----NTAHVEYETEKRHYAHVDCPGHADY------VKNMITGAAQMDGAILVVSAADGPM 113
Query: 121 PQTKFVVGKALKIGLRPIVV-VNKVDRSDARADE-----VINEVFDLFSALDATDAQLDF 174
PQT+ + A ++G+ IVV +NK D D DE V EV +L S D D
Sbjct: 114 PQTREHILLARQVGVPYIVVFLNKCDMVD---DEELLELVEMEVRELLSKYDFPGD--DT 168
Query: 175 PILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVISEGEFKMIGTILEKD-PFL- 232
PI+ GS + D ++ ++ L++ + ++P P D PFL
Sbjct: 169 PIIRGSA-LKALEGDDDEEWEKKILELMDAVDSYIPTPE------------RAIDKPFLM 215
Query: 233 -----------GRIVTGRIHSGTIKSNQNI 251
G +VTGR+ G IK + +
Sbjct: 216 PIEDVFSISGRGTVVTGRVERGIIKVGEEV 245
>gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain. This model
recognizes a large number of small GTP-binding proteins
and related domains in larger proteins. Note that the
alpha chains of heterotrimeric G proteins are larger
proteins in which the NKXD motif is separated from the
GxxxxGK[ST] motif (P-loop) by a long insert and are not
easily detected by this model.
Length = 161
Score = 73.2 bits (180), Expect = 2e-13
Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 32/160 (20%)
Query: 19 IRNIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERV-----MDCNDLEKERGITILAK 73
I I+ + GK+TL++ LL N+ ++E + +E G T
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLG-------NKFITEYKPGTTRNYVTTVIEEDGKTYKF- 52
Query: 74 VTSIVWNDVRINIVDTPGHADF-------GGEVERILCMVESVVVLVDAAEGPMPQTKFV 126
N++DT G D+ VE L + + V++++D E QTK
Sbjct: 53 -----------NLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTK-E 100
Query: 127 VGKALKIGLRPIVVVNKVDRSDARADEVINEVFDLFSALD 166
+ + + I+V NK+D DA+ + +F +
Sbjct: 101 IIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEP 140
>gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha.
This model represents the counterpart of bacterial EF-Tu
for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1
alpha). The trusted cutoff is set fairly high so that
incomplete sequences will score between suggested and
trusted cutoff levels.
Length = 426
Score = 72.6 bits (178), Expect = 3e-13
Identities = 69/292 (23%), Positives = 117/292 (40%), Gaps = 37/292 (12%)
Query: 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQ------RVSER---------VMDCNDLEKE 65
N+A I HVDHGK+T V LL + G + E+ VMD E+E
Sbjct: 9 NVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERE 68
Query: 66 RGITILAKVTSIVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGP---MPQ 122
RG+TI + + IVD PGH DF + ++ V++V +G PQ
Sbjct: 69 RGVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQ 128
Query: 123 TKFVVGKALKIGLRPIVV-VNKVDR---SDARADEVINEVFDLFSALDATDAQLDF-PI- 176
T+ A +G+ ++V +NK+D + + + EV +L + + F PI
Sbjct: 129 TREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPIS 188
Query: 177 -LYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHVPPPVISEGEFKMIGTILEKDPFLGRI 235
G + S+ + LL + PP ++ ++ + +G +
Sbjct: 189 AWNGDN----VIKKSENTPWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSITGVGTV 244
Query: 236 VTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGD 287
GR+ +G +K + P G EV + + + I++A GD
Sbjct: 245 PVGRVETGVLKPGDKV-VFEPAGVSGEVKSIE-------MHHEQIEQAEPGD 288
>gnl|CDD|178672 PLN03126, PLN03126, Elongation factor Tu; Provisional.
Length = 478
Score = 71.6 bits (175), Expect = 6e-13
Identities = 77/287 (26%), Positives = 128/287 (44%), Gaps = 29/287 (10%)
Query: 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWN 80
NI I HVDHGKTTL L + +D E+ RGITI
Sbjct: 83 NIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE 142
Query: 81 DVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVV 140
+ VD PGHAD+ + ++ +++V A+GPMPQTK + A ++G+ +VV
Sbjct: 143 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVV 202
Query: 141 -VNKVDRSDARADE-----VINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSR 194
+NK D+ D DE V EV +L S+ + D PI+ GS + + +
Sbjct: 203 FLNKQDQVD---DEELLELVELEVRELLSSYEFPGD--DIPIISGSALLALEALMENPNI 257
Query: 195 DQG-------MVPLLNLIVDHVP-PPVISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIK 246
+G + L++ + ++P P ++ F + + G + TGR+ GT+K
Sbjct: 258 KRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVK 317
Query: 247 SNQNIKALSPDGALVEVGRVSKILAFRGID--RQPIDEAHAGDIVSI 291
+ + + R ++ G++ ++ +DEA AGD V +
Sbjct: 318 VGETVDIVGL--------RETRSTTVTGVEMFQKILDEALAGDNVGL 356
>gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed.
Length = 396
Score = 71.0 bits (175), Expect = 9e-13
Identities = 88/304 (28%), Positives = 132/304 (43%), Gaps = 71/304 (23%)
Query: 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWN 80
N+ I HVDHGKTTL + K + + +D EK RGITI TS V
Sbjct: 14 NVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITI---NTSHVEY 70
Query: 81 DVRIN---IVDTPGHADFGGEVERILCMV------ESVVVLVDAAEGPMPQTKFVVGKAL 131
+ VD PGHAD+ + M+ + +++V AA+GPMPQT+ + A
Sbjct: 71 ETANRHYAHVDCPGHADY------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 132 KIGLRPIVV-VNKVDRSDARADE-----VINEVFDLFSALD-ATDAQLDFPILYGSGRFG 184
++G+ IVV +NK D D DE V EV +L S D D D PI+ GS
Sbjct: 125 QVGVPYIVVFLNKCDMVD---DEELLELVEMEVRELLSKYDFPGD---DTPIIRGSA-LK 177
Query: 185 WMSDSSDGSRDQGMVPLLNLIVDHVPPPVISEGEFKMIGTILEKD---PFL--------- 232
+ D + ++ L++ + ++P P E+ PFL
Sbjct: 178 ALEGDDDEEWEAKILELMDAVDSYIPEP--------------ERAIDKPFLMPIEDVFSI 223
Query: 233 ---GRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGID--RQPIDEAHAGD 287
G +VTGR+ G +K ++ +V + K G++ R+ +DE AGD
Sbjct: 224 SGRGTVVTGRVERGIVKVGDEVE-------IVGIKETQKTTV-TGVEMFRKLLDEGQAGD 275
Query: 288 IVSI 291
V +
Sbjct: 276 NVGV 279
>gnl|CDD|161900 TIGR00487, IF-2, translation initiation factor IF-2. This model
discriminates eubacterial (and mitochondrial)
translation initiation factor 2 (IF-2), encoded by the
infB gene in bacteria, from similar proteins in the
Archaea and Eukaryotes. In the bacteria and in
organelles, the initiator tRNA is charged with
N-formyl-Met instead of Met. This translation factor
acts in delivering the initator tRNA to the ribosome. It
is one of a number of GTP-binding translation factors
recognized by the pfam model GTP_EFTU.
Length = 587
Score = 63.6 bits (155), Expect = 1e-10
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 29/143 (20%)
Query: 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND 81
+ I+ HVDHGKT+L+D + K +V++ + GIT + D
Sbjct: 90 VTIMGHVDHGKTSLLDSIRKT--------KVAQG--------EAGGITQHIGAYHVENED 133
Query: 82 -VRINIVDTPGHADF------GGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIG 134
I +DTPGH F G +V I VV++V A +G MPQT + A
Sbjct: 134 GKMITFLDTPGHEAFTSMRARGAKVTDI------VVLVVAADDGVMPQTIEAISHAKAAN 187
Query: 135 LRPIVVVNKVDRSDARADEVINE 157
+ IV +NK+D+ +A D V E
Sbjct: 188 VPIIVAINKIDKPEANPDRVKQE 210
>gnl|CDD|180006 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 787
Score = 61.1 bits (149), Expect = 8e-10
Identities = 52/149 (34%), Positives = 68/149 (45%), Gaps = 42/149 (28%)
Query: 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKE-RGIT--ILAKVTSIV 78
+ I+ HVDHGKT+L+D + K V E GIT I A +
Sbjct: 293 VTIMGHVDHGKTSLLDAIRK------------TNVA-----AGEAGGITQHIGA--YQVE 333
Query: 79 WNDVRINIVDTPGHADF------GGEVERILCMVESVVVLVDAA-EGPMPQTKFVV--GK 129
N +I +DTPGH F G +V I VVLV AA +G MPQT + K
Sbjct: 334 TNGGKITFLDTPGHEAFTAMRARGAQVTDI-------VVLVVAADDGVMPQTIEAINHAK 386
Query: 130 ALKIGLRPIVV-VNKVDRSDARADEVINE 157
A + PI+V +NK+D+ A D V E
Sbjct: 387 AAGV---PIIVAINKIDKPGANPDRVKQE 412
>gnl|CDD|165621 PLN00043, PLN00043, elongation factor 1-alpha; Provisional.
Length = 447
Score = 57.8 bits (139), Expect = 7e-09
Identities = 73/300 (24%), Positives = 121/300 (40%), Gaps = 43/300 (14%)
Query: 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSER-----------------VMDCNDLE 63
NI +I HVD GK+T L+ + G ++RV ER V+D E
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKLGGI--DKRVIERFEKEAAEMNKRSFKYAWVLDKLKAE 66
Query: 64 KERGITILAKVTSIVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMP-- 121
+ERGITI + ++D PGH DF + + V+++D+ G
Sbjct: 67 RERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAG 126
Query: 122 -----QTKFVVGKALKIGLRPIV-VVNKVDR-----SDARADEVINEVFDLFSALDATDA 170
QT+ A +G++ ++ NK+D S AR DE++ EV +
Sbjct: 127 ISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPD 186
Query: 171 QLDFPILYGSGRFGWMSDSSDGSRDQGMVPLLNLIVDHV-PPPVISEGEFKMIGTILEKD 229
++ F + G + S++ +G P L +D + P S+ ++ + K
Sbjct: 187 KIPFVPISGFEGDNMIERSTNLDWYKG--PTLLEALDQINEPKRPSDKPLRLPLQDVYKI 244
Query: 230 PFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIV 289
+G + GR+ +G IK + P G EV V + + + EA GD V
Sbjct: 245 GGIGTVPVGRVETGVIKPGM-VVTFGPTGLTTEVKSVE-------MHHESLQEALPGDNV 296
>gnl|CDD|179703 PRK04000, PRK04000, translation initiation factor IF-2 subunit
gamma; Validated.
Length = 411
Score = 57.6 bits (140), Expect = 1e-08
Identities = 51/164 (31%), Positives = 70/164 (42%), Gaps = 63/164 (38%)
Query: 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITI---------- 70
NI ++ HVDHGKTTLV L +GV+ D R SE E +RGITI
Sbjct: 11 NIGMVGHVDHGKTTLVQAL---TGVWTD--RHSE--------ELKRGITIRLGYADATIR 57
Query: 71 --------LAKVTSIVWNDV--------RINIVDTPGHADFGGEVERILCM--------V 106
A T + R++ VD PGH L +
Sbjct: 58 KCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGH--------ETLMATMLSGAALM 109
Query: 107 ESVVVLVDAAEG-PMPQTK--FVVGKALKI-GLRPIVVV-NKVD 145
+ ++++ A E P PQTK + AL I G++ IV+V NK+D
Sbjct: 110 DGAILVIAANEPCPQPQTKEHLM---ALDIIGIKNIVIVQNKID 150
>gnl|CDD|163393 TIGR03680, eif2g_arch, translation initiation factor 2 subunit
gamma. eIF-2 functions in the early steps of protein
synthesis by forming a ternary complex with GTP and
initiator tRNA.
Length = 406
Score = 55.1 bits (133), Expect = 5e-08
Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 43/154 (27%)
Query: 21 NIAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITI-LAKVTSIVW 79
NI ++ HVDHGKTTL L +GV+ D SE E +RGI+I L + ++
Sbjct: 6 NIGMVGHVDHGKTTLTKAL---TGVWTD--THSE--------ELKRGISIRLGYADAEIY 52
Query: 80 NDV-------------------------RINIVDTPGHADFGGEVERILCMVESVVVLVD 114
R++ VD PGH + +++ ++++
Sbjct: 53 KCPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIA 112
Query: 115 AAEG-PMPQTKFVVGKALKI-GLRPIVVV-NKVD 145
A E P PQTK + AL+I G++ IV+V NK+D
Sbjct: 113 ANEPCPQPQTKEHL-MALEIIGIKNIVIVQNKID 145
>gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation
factor; Provisional.
Length = 614
Score = 53.5 bits (129), Expect = 2e-07
Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 43/177 (24%)
Query: 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND 81
IA HVDHGKTTL+ + +GV + R+ E EK+RG+TI D
Sbjct: 3 IATAGHVDHGKTTLLQAI---TGV--NADRLPE--------EKKRGMTIDLGYAYWPQPD 49
Query: 82 VR-INIVDTPGHADF--------GGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALK 132
R + +D PGH F GG ++ +++V +G M QT+ + L
Sbjct: 50 GRVLGFIDVPGHEKFLSNMLAGVGG--------IDHALLVVACDDGVMAQTR----EHLA 97
Query: 133 IGLRPI------VVVNKVDR-SDARADEVINEVFDLFSALDATDAQLDFPILYGSGR 182
I L+ V + K DR +AR EV +V + +A+L F GR
Sbjct: 98 I-LQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKL-FVTAATEGR 152
>gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional.
Length = 446
Score = 51.7 bits (124), Expect = 6e-07
Identities = 73/291 (25%), Positives = 113/291 (38%), Gaps = 64/291 (21%)
Query: 21 NIAIIAHVDHGKTTLVDELL-KQSGVFRDNQRVSER-----------------VMDCNDL 62
N+ +I HVD GK+T L+ K G+ ++R E+ V+D
Sbjct: 9 NLVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAAEMGKGSFKYAWVLDKLKA 65
Query: 63 EKERGITILAKVTSIVWNDVRINIVDTPGHADF-------GGEVERILCMVESVVVLVDA 115
E+ERGITI + I+D PGH DF + + + +V S +A
Sbjct: 66 ERERGITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEA 125
Query: 116 AEGPMPQTKFVVGKALKIGLRPIVV-VNKVDR-----SDARADEVINEVFDLFSALDATD 169
QT+ A +G++ ++V +NK+D S R DE+ EV +
Sbjct: 126 GISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNP 185
Query: 170 AQLDF-PILYGSGRFGWMSDSSDGSRDQGMV----PLLNLIVDHVPPPVIS--------- 215
++ F PI GW D+ D M P L +D + PP
Sbjct: 186 EKVPFIPI------SGWQGDNMIEKSDN-MPWYKGPTLLEALDTLEPPKRPVDKPLRLPL 238
Query: 216 EGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRV 266
+ +K IG I G + GR+ +G +K + +P G EV V
Sbjct: 239 QDVYK-IGGI-------GTVPVGRVETGILKPGMVVT-FAPSGVTTEVKSV 280
>gnl|CDD|179704 PRK04004, PRK04004, translation initiation factor IF-2; Validated.
Length = 586
Score = 51.3 bits (124), Expect = 6e-07
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 60/162 (37%)
Query: 17 MQIRN--IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERG-IT---- 69
++R + ++ HVDHGKTTL+D++ + KE G IT
Sbjct: 2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVA-----------------AKEAGGITQHIG 44
Query: 70 -------ILAKVTSIVWNDVRINI-------VDTPGHADF------GGEVERILCMVESV 109
++ K+ + + I + +DTPGH F GG + I
Sbjct: 45 ATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADI------A 98
Query: 110 VVLVDAAEGPMPQTKFVVGKALKIGLR----P-IVVVNKVDR 146
+++VD EG PQT +A+ I L+ P +V NK+DR
Sbjct: 99 ILVVDINEGFQPQTI----EAINI-LKRRKTPFVVAANKIDR 135
Score = 31.3 bits (72), Expect = 0.76
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 235 IVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQ-PIDEAHAGDIVSIA 292
IV + GTIK + + DG VG + +I D+ + EA AG V+I+
Sbjct: 484 IVGVEVLGGTIKPGVPL--IKEDGK--RVGTIKQIQ-----DQGENVKEAKAGMEVAIS 533
>gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2. This
model describes archaeal and eukaryotic orthologs of
bacterial IF-2. Like IF-2, it helps convey the initiator
tRNA to the ribosome, although the initiator is
N-formyl-Met in bacteria and Met here. This protein is
not closely related to the subunits of eIF-2 of
eukaryotes, which is also involved in the initiation of
translation. The aIF-2 of Methanococcus jannaschii
contains a large intein interrupting a region of very
strongly conserved sequence very near the amino end;
this model does not correctly align the sequences from
Methanococcus jannaschii and Pyrococcus horikoshii in
this region.
Length = 590
Score = 51.0 bits (122), Expect = 9e-07
Identities = 72/316 (22%), Positives = 128/316 (40%), Gaps = 57/316 (18%)
Query: 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND 81
++++ HVDHGKTTL+D++ + R+ +++ + E + ++ + +
Sbjct: 7 VSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIG-----ATEIPMDVIEGICGDLLKK 61
Query: 82 VRINI-------VDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIG 134
+I + +DTPGH F +R + + +++VD EG PQT+ +AL I
Sbjct: 62 FKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQ----EALNI- 116
Query: 135 LRP-----IVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILY----------- 178
LR +V NK+DR + FS + Q +Y
Sbjct: 117 LRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGF 176
Query: 179 GSGRFGWMSDSS--------DGSRDQGMVPLLNLIV----DHVPPPVISEGEFKMIGTIL 226
+ RF ++D + +G+ LL ++ ++ + E E GTIL
Sbjct: 177 EAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTIL 236
Query: 227 E--KDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDR------- 277
E ++ LG + I+ G ++ I D +V RV +L R ++
Sbjct: 237 EVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVT--RVRALLKPRPLEEMRESRKK 294
Query: 278 -QPIDEAHAGDIVSIA 292
Q +DE A V IA
Sbjct: 295 FQKVDEVVAAAGVKIA 310
>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Provisional.
Length = 632
Score = 45.7 bits (109), Expect = 4e-05
Identities = 54/184 (29%), Positives = 79/184 (42%), Gaps = 59/184 (32%)
Query: 28 VDHGKTTLVDELLKQSG-VFRDN----QRVSERVMDCND------------LEKERGITI 70
VD GK+TL+ LL S +F D +R S++V D E+E+GITI
Sbjct: 33 VDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITI 92
Query: 71 LAKVTSIVWNDV---------RINIV-DTPGHADFGGEVERILCMV------ESVVVLVD 114
DV R IV DTPGH + MV + ++LVD
Sbjct: 93 ----------DVAYRYFATPKRKFIVADTPGHEQYTRN------MVTGASTADLAIILVD 136
Query: 115 AAEGPMPQTK---FVVGKALKIGLRPIVV-VNK---VDRSDARADEVINEVFDLFSALDA 167
A +G + QT+ F+ +L +G+R +V+ VNK VD DE++ + + L
Sbjct: 137 ARKGVLTQTRRHSFIA--SL-LGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGL 193
Query: 168 TDAQ 171
D
Sbjct: 194 HDVT 197
>gnl|CDD|131089 TIGR02034, CysN, sulfate adenylyltransferase, large subunit.
Homologous to this E.coli activation pathway are nodPQH
gene products found among members of the Rhizobiaceae
family. These gene products have been shown to exhibit
ATP sulfurase and APS kinase activity, yet are involved
in Nod factor sulfation, and sulfation of other
macromolecules. With members of the Rhizobiaceae family,
nodQ often appears as a fusion of cysN (large subunit of
ATP sulfurase) and cysC (APS kinase).
Length = 406
Score = 45.4 bits (108), Expect = 4e-05
Identities = 72/294 (24%), Positives = 119/294 (40%), Gaps = 50/294 (17%)
Query: 28 VDHGKTTLVDELLKQSGVFRDNQ-----RVSER------------VMDCNDLEKERGITI 70
VD GK+TL+ LL + ++Q R S++ ++D E+E+GITI
Sbjct: 9 VDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITI 68
Query: 71 LAKVTSIVWNDVRINIVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKA 130
+ + + DTPGH + + + V+LVDA +G + QT+ A
Sbjct: 69 DVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIA 128
Query: 131 LKIGLRPIVV-VNKVDRS--DARADEVINEVFDLFS-ALDATDAQLDFPI--LYG----- 179
+G+R +V+ VNK+D D E I + + F+ L D P+ L G
Sbjct: 129 SLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTF-IPLSALKGDNVVS 187
Query: 180 -SGRFGWMSDSSDGSRDQGMVPLLNLIVDHVP-PPVISEGEFKMIGTILEKDPFLGRIVT 237
S W S P L I++ V + + + + R
Sbjct: 188 RSESMPWYSG-----------PTLLEILETVEVERDAQDLPLRFPVQYVNRPNLDFRGYA 236
Query: 238 GRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGIDRQPIDEAHAGDIVSI 291
G I SG++ + L P G RV++I+ F G +++A AG V++
Sbjct: 237 GTIASGSVHVGDEVVVL-PSG---RSSRVARIVTFDG----DLEQARAGQAVTL 282
>gnl|CDD|163343 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA. EngA
(YfgK, Der) is a ribosome-associated essential GTPase
with a duplication of its GTP-binding domain. It is
broadly to universally distributed among bacteria. It
appears to function in ribosome biogenesis or stability.
Length = 429
Score = 42.0 bits (100), Expect = 4e-04
Identities = 45/204 (22%), Positives = 70/204 (34%), Gaps = 62/204 (30%)
Query: 31 GKTTLVDELLK--------QSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWNDV 82
GK+TL + L GV RD R W
Sbjct: 11 GKSTLFNRLTGKRDAIVSDTPGVTRD--RKYGDA---------------------EWGGR 47
Query: 83 RINIVDTPGHAD----FGGEVER--ILCMVESVVVL--VDAAEGPMPQTKFVVGKALKIG 134
++DT G + ++ + + E+ V+L VD EG P+ + + K G
Sbjct: 48 EFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSG 107
Query: 135 LRPIVVVNKVDRSDARADEVINEVFDLFSALDATDAQLDFPILYGSGRFGWMSDSSDGSR 194
I+V NK+D + D V E F +L + PI S G
Sbjct: 108 KPVILVANKID--GKKEDAVAAE----FYSLGFGEP---IPI---SAEHG---------- 145
Query: 195 DQGMVPLLNLIVDHVPPPVISEGE 218
+G+ LL+ I++ +P E E
Sbjct: 146 -RGIGDLLDAILELLPEEEEEEEE 168
Score = 41.3 bits (98), Expect = 7e-04
Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 36/178 (20%)
Query: 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND 81
IAII + GK+TLV+ LL + ERV+ + G T + N
Sbjct: 175 IAIIGRPNVGKSTLVNALLGE-----------ERVIVSD----IAGTTRDSIDIPFERNG 219
Query: 82 VRINIVDTPG-----HADFGGE------VERILCMVESVVVLVDAAEGPMPQTKFVVGKA 130
+ ++DT G G E + + + V++++DA EG Q + G
Sbjct: 220 KKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLI 279
Query: 131 LKIGLRPIVVVNKVD--RSDARADEVINEVFDLFSALDATDAQLDF-PILYGSGRFGW 185
L+ G ++VVNK D + + +E E L LDF PI++ S G
Sbjct: 280 LEAGKALVIVVNKWDLVKDEKTREEFKKE-------LRRKLPFLDFAPIVFISALTGQ 330
>gnl|CDD|179943 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.
Length = 474
Score = 40.3 bits (95), Expect = 0.001
Identities = 81/325 (24%), Positives = 126/325 (38%), Gaps = 111/325 (34%)
Query: 28 VDHGKTTLVDELL---KQ------SGVFRDNQRVS---ERVMDCNDL---------EKER 66
VD GK+TL+ LL KQ + + D++R E++ DL E+E+
Sbjct: 36 VDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKL----DLALLVDGLQAEREQ 91
Query: 67 GITILAKVTSIVWNDV----------RINIVDTPGHADF------GGEVERILCMVESVV 110
GITI DV + I DTPGH + G C + +
Sbjct: 92 GITI----------DVAYRYFSTEKRKFIIADTPGHEQYTRNMATGAST----C--DLAI 135
Query: 111 VLVDAAEGPMPQTK---FVVGKALKIGLRPIVV-VNK---VDRSDARADEVINEVFDLFS 163
+L+DA +G + QT+ F+ A +G++ +VV VNK VD S+ + + +
Sbjct: 136 LLIDARKGVLDQTRRHSFI---ATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAE 192
Query: 164 ALDATDAQLDF-PI--LYG------SGRFGWMSDSS--------DGSRDQGMVPLLNLIV 206
L + + F P+ L G S W S + D R P V
Sbjct: 193 QLP-GNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETVDIQRVVDAQP-FRFPV 250
Query: 207 DHVPPPVISEGEFKMIGTILEKDPFLGRIVTGRIHSGTIKSNQNIKALSPDGALVEVGRV 266
+V P + F G G + SG +K +K L P G V
Sbjct: 251 QYVNRPNLD---------------FRG--YAGTLASGVVKVGDRVKVL-PSGK---ESNV 289
Query: 267 SKILAFRGIDRQPIDEAHAGDIVSI 291
++I+ F G D + EA AG+ +++
Sbjct: 290 ARIVTFDG-DLE---EAFAGEAITL 310
>gnl|CDD|178858 PRK00093, PRK00093, GTP-binding protein Der; Reviewed.
Length = 435
Score = 38.5 bits (91), Expect = 0.005
Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 35/170 (20%)
Query: 22 IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITILAKVTSIVWND 81
IAII + GK++L++ LL + ERV+ + G T + T +
Sbjct: 176 IAIIGRPNVGKSSLINALLGE-----------ERVIVSD----IAGTTRDSIDTPFERDG 220
Query: 82 VRINIVDTPG-----HADFGGE---VERILCMVES--VVVLV-DAAEGPMPQTKFVVGKA 130
+ ++DT G G E V R L +E VV+LV DA EG Q + G A
Sbjct: 221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLA 280
Query: 131 LKIGLRPIVVVNKVD-RSDARADEVINEVFDLFSALDATDAQLDF-PILY 178
L+ G ++VVNK D + +E E+ LD+ PI++
Sbjct: 281 LEAGRALVIVVNKWDLVDEKTMEEFKKELRRRL-------PFLDYAPIVF 323
Score = 37.0 bits (87), Expect = 0.016
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 79 WNDVRINIVDTPG----HADFGGEVER--ILCMVESVVVL--VDAAEGPMPQTKFVVGKA 130
W ++DT G F ++ L + E+ V+L VD G P + +
Sbjct: 46 WLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKIL 105
Query: 131 LKIGLRPIVVVNKVDRSDARAD 152
K I+VVNKVD D AD
Sbjct: 106 RKSNKPVILVVNKVDGPDEEAD 127
>gnl|CDD|178854 PRK00089, era, GTPase Era; Reviewed.
Length = 292
Score = 37.7 bits (89), Expect = 0.009
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 20/91 (21%)
Query: 87 VDTPG-HADFGGEVERIL--CMVES----------VVVLVDAAEGPMPQTKFVVGKALKI 133
VDTPG H +R L M ++ V+ +VDA E P +F++ K K+
Sbjct: 58 VDTPGIHKP-----KRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV 112
Query: 134 GLRPIVVVNKVDRSDARAD--EVINEVFDLF 162
I+V+NK+D + + ++ E+ +L
Sbjct: 113 KTPVILVLNKIDLVKDKEELLPLLEELSELM 143
>gnl|CDD|185557 PTZ00327, PTZ00327, eukaryotic translation initiation factor 2
gamma subunit; Provisional.
Length = 460
Score = 35.7 bits (83), Expect = 0.033
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 21/54 (38%)
Query: 21 NIAIIAHVDHGKTTLVDELLKQSGV----FRDNQRVSERVMDCNDLEKERGITI 70
NI I HV HGK+T+V L SGV F+ EK R ITI
Sbjct: 36 NIGTIGHVAHGKSTVVKAL---SGVKTVRFKR--------------EKVRNITI 72
>gnl|CDD|181925 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 34.4 bits (79), Expect = 0.095
Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 5 DGLFFIYGRLGYMQ--IRNIAIIAHVDHGKTTLVDELL-KQSGVFRDNQRVSERVMDCND 61
+G F+ G + +AI+ + GK+TLV+ +L ++ V D V+
Sbjct: 259 EGSGFVAGDEKAGPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVT-------- 310
Query: 62 LEKERGITILAKVTSIVWNDVRINIVDTPG--------HADFGGEVERILCMVESVVVLV 113
++R ++ A+ W +VDT G + + + + + ++VV +V
Sbjct: 311 --RDR-VSYDAE-----WAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVV 362
Query: 114 DAAEGPMPQTKFVVGKALKIGLRPI-VVVNKVD 145
D G T + + L+ +P+ + VNK+D
Sbjct: 363 DGQVGLT-STDERIVRMLRRAGKPVVLAVNKID 394
>gnl|CDD|184848 PRK14845, PRK14845, translation initiation factor IF-2;
Provisional.
Length = 1049
Score = 33.7 bits (77), Expect = 0.15
Identities = 67/264 (25%), Positives = 103/264 (39%), Gaps = 45/264 (17%)
Query: 86 IVDTPGHADFGGEVERILCMVESVVVLVDAAEGPMPQTKFVVGKALKIGLRPIVV-VNKV 144
+DTPGH F +R + + V++VD EG PQT + L+ P VV NK+
Sbjct: 530 FIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAI-NILRQYKTPFVVAANKI 588
Query: 145 DRSDARADEVINEVFDLFSALDATDAQLDFPI--------LYGSGRFGWMSDSSDGSRD- 195
D +E F L A + I LY G+ +D D +D
Sbjct: 589 DLIPGWNISE-DEPFLLNFNEQDQHALTELEIKLYELIGKLY---ELGFDADRFDRVQDF 644
Query: 196 --------------QGMVPLLNLIV----DHVPPPVISEGEFKMIGTILE--KDPFLGRI 235
+G+ LL ++ ++ + E GTILE ++ LG
Sbjct: 645 TRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTT 704
Query: 236 VTGRIHSGTIKSNQNIKALSPDGALVEVGRVSKILAFRGID--RQPIDEAHAGDIVSIAG 293
+ I+ GT++ I PD +V +V +L + +D R P D+ D V+ A
Sbjct: 705 IDAIIYDGTLRRGDTIVVGGPDDVIVT--KVRALLKPKPLDEIRDPRDKFDPVDEVTAAA 762
Query: 294 LVKATVADTFCDPSIDEPLKAQPI 317
VK P ++E L PI
Sbjct: 763 GVKIAA------PGLEEVLAGSPI 780
>gnl|CDD|183441 PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed.
Length = 764
Score = 32.6 bits (75), Expect = 0.31
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 273 RGIDRQ-PIDEAHAGDIVSIAGLVKATV---ADTFCDPSIDEP---LKAQPIDPPTVTMT 325
R + RQ P+DE H + + L V +TF I + L + PT T T
Sbjct: 681 RALGRQNPLDEFHRMAVDAFKSLAADAVERAQETFETAEITDDGADLDLAGLARPTATWT 740
Query: 326 FGVNDSPLAGTEGDKVTSRMIR 347
+ V+D+PL+ +G V S +
Sbjct: 741 YMVHDNPLSS-DGLSVLSGLPG 761
>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.
Length = 265
Score = 31.3 bits (71), Expect = 0.72
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 12/60 (20%)
Query: 141 VNKVDRSDARADEVINEVFDLFSALD--ATDAQLDFPILYGSGR-------FGWMSDSSD 191
+++ D+++A ++I E L ALD +DA L F +L G GR WM S+D
Sbjct: 21 LSRADKNNAFNAQMIRE---LILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSAD 77
>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional.
Length = 201
Score = 31.0 bits (71), Expect = 0.85
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 133 IGLRPIVVVNKVDRSDARADEVINEVFDLF 162
+G+ PIV VNK+D+ R DEV++E+ +
Sbjct: 129 LGIPPIVAVNKMDKIKNR-DEVLDEIAERL 157
>gnl|CDD|179275 PRK01294, PRK01294, lipase chaperone; Provisional.
Length = 336
Score = 30.4 bits (69), Expect = 1.3
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 348 DRLFKEAEGNIALKIEESSSKDAF--FVSGRGELQLAVLIETMRRE 391
L +A+G++A + +D F F+S GEL LA + + RE
Sbjct: 72 PGLPLDAQGHLAD---TRALRDFFDYFLSALGELDLAAIDALVERE 114
>gnl|CDD|179996 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed.
Length = 449
Score = 30.5 bits (70), Expect = 1.3
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 76 SIVWNDVRINIVDTPGHADFGGEVERI-----LCMVES---VVVLVDAAEGPMPQTKFVV 127
I + + + ++DT G + EVE+I +E V++++DA+E + ++
Sbjct: 257 HINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEIL 316
Query: 128 GKALKIGLRPIVVVNKVDRSDARADEVIN 156
+ + IVV+NK D + E N
Sbjct: 317 EELKDKPV--IVVLNKADLTGEIDLEEEN 343
>gnl|CDD|129071 smart00838, EFG_C, Elongation factor G C-terminus. This domain
includes the carboxyl terminal regions of Elongation
factor G, elongation factor 2 and some tetracycline
resistance proteins and adopt a ferredoxin-like fold.
Length = 85
Score = 30.6 bits (70), Expect = 1.3
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 411 LLEPIEEVVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVFLSPTRGLIGYQSQL 470
LLEPI +V + V EE+ G V+ + + ++ + G +V + P + GY + L
Sbjct: 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKV-PLSEMFGYATDL 59
Query: 471 MTDTRGTAIMNRLFHSYQP 489
+ T+G A + F Y+
Sbjct: 60 RSATQGRATWSMEFSHYEE 78
>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed.
Length = 472
Score = 29.2 bits (66), Expect = 3.0
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 41/148 (27%)
Query: 22 IAIIAHVDHGKTTLVDELLKQS--------GVFRDNQRVSERVMDCNDLEKERGITILAK 73
+A++ + GK+TLV+ +L + GV RD RVS
Sbjct: 41 VAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRD--RVSYDAE---------------- 82
Query: 74 VTSIVWNDVRINIVDTPG--------HADFGGEVERILCMVESVVVLVDAAEGPMPQTKF 125
WN R +VDT G A + E + ++V+ +VDA G T
Sbjct: 83 -----WNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGAT-ATDE 136
Query: 126 VVGKALKIGLRPIVVV-NKVDRSDARAD 152
V + L+ +P+++ NKVD AD
Sbjct: 137 AVARVLRRSGKPVILAANKVDDERGEAD 164
>gnl|CDD|148110 pfam06303, MatP, Organiser of macrodomain of Terminus of
chromosome. This family, many of whose members are
YcbG, organises the macrodomain Ter of the chromosome of
bacteria such as E coli. In these bacteria, insulated
macrodomains influence the segregation of sister
chromatids and the mobility of chromosomal DNA.
Organisation of the Terminus region (Ter) into a
macrodomain relies on the presence of a 13 bp motif
called matS repeated 23 times in the 800-kb-long domain.
MatS sites are the main targets in the E. coli
chromosome of YcbG or MatP (macrodomain Ter protein).
MatP accumulates in the cell as a discrete focus that
co-localizes with the Ter macrodomain. The effects of
MatP inactivation reveal its role as the main organiser
of the Ter macrodomain: in the absence of MatP, DNA is
less compacted, the mobility of markers is increased,
and segregation of the Ter macrodomain occurs early in
the cell cycle. A specific organisational system is
required in the Terminus region for bacterial chromosome
management during the cell cycle.
Length = 148
Score = 28.9 bits (65), Expect = 4.2
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 563 SGKDEAVKLVPAVKMTLEQALSWIQ---NDELVEVTPKSIRL-RKMYLDPNERKRKGKSV 618
S + AV+ + ++ + L WI+ N EL ++IR RK + + ++ + KS+
Sbjct: 35 SLAEAAVQELLKLEHEPVKVLEWIKAHMNPELENKMKQAIRARRKRHFNAEKQHTRKKSI 94
Query: 619 NLEYNV 624
+LEY V
Sbjct: 95 DLEYRV 100
>gnl|CDD|161885 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE. TrmE,
also called MnmE and previously designated ThdF
(thiophene and furan oxidation protein), is a GTPase
involved in tRNA modification to create
5-methylaminomethyl-2-thiouridine in the wobble position
of some tRNAs. This protein and GidA form an
alpha2/beta2 heterotetramer.
Length = 442
Score = 28.6 bits (64), Expect = 5.0
Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 29/143 (20%)
Query: 15 GYMQIRN---IAIIAHVDHGKTTLVDELLKQSGVFRDNQRVSERVMDCNDLEKERGITIL 71
++ + +AI+ + GK++L++ LLKQ D VS+ D+ +
Sbjct: 196 KLEKLDDGFKLAIVGSPNVGKSSLLNALLKQ-----DRAIVSDIKGTTRDVVEG------ 244
Query: 72 AKVTSIVWNDVRINIVDTPGHADFGGEVERI--------LCMVESVVVLVDAAEGPMPQT 123
N + I ++DT G + VER+ + + V+ ++DA++
Sbjct: 245 ----DFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDD 300
Query: 124 KFVVGKALKIGLRP-IVVVNKVD 145
++ L +P I+V+NK+D
Sbjct: 301 FLII--DLNKSKKPFILVLNKID 321
>gnl|CDD|183557 PRK12494, PRK12494, NADH dehydrogenase subunit J; Provisional.
Length = 172
Score = 28.0 bits (63), Expect = 7.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 255 SPDGALVEVGRVSKILAFRGIDRQPIDEAHAG 286
+P+ A+VE G VS+ L G + + + H G
Sbjct: 8 TPEAAIVEAGPVSQWLTENGFEHESLGPDHLG 39
>gnl|CDD|162404 TIGR01533, lipo_e_P4, 5'-nucleotidase, lipoprotein e(P4) family.
which in turn belongs to the haloacid dehalogenase (HAD)
superfamily of aspartate-dependent hydrolases. Members
are found on the outer membrane of Gram-negative
bacteria and the cytoplasmic membrane of Gram-positive
bacteria. Most members have classic lipoprotein signal
sequences. A critical role of this 5'-nucleotidase in
Haemophilus influenzae is the degradation of external
riboside in order to allow transport into the cell. An
earlier suggested role in hemin transport is no longer
current. This enzyme may also have other physiologically
significant roles.
Length = 266
Score = 27.9 bits (62), Expect = 7.9
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 369 DAFFVSGRGELQLAVLIETMRREGFELAVSRPRVVIKKEGDS 410
F+VS R E + A ++ ++R GF A +++KK+ S
Sbjct: 136 KIFYVSNRSEKEKAATLKNLKRFGFPQA-DEEHLLLKKDKSS 176
>gnl|CDD|184709 PRK14494, PRK14494, putative molybdopterin-guanine dinucleotide
biosynthesis protein MobB/FeS domain-containing protein
protein; Provisional.
Length = 229
Score = 27.6 bits (62), Expect = 8.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 19 IRNIAIIAHVDHGKTTLVDELLKQS 43
+R I +I D GKTTL++++LK
Sbjct: 1 MRAIGVIGFKDSGKTTLIEKILKNL 25
>gnl|CDD|183316 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase;
Provisional.
Length = 409
Score = 27.8 bits (63), Expect = 9.1
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 9/39 (23%)
Query: 418 VVIDVDEEHSGAVVQKMTLHKSEMIELRPSGTGRVRLVF 456
VVIDVD +++ + + GT R RL++
Sbjct: 380 VVIDVDADYAEEALDALKAIP---------GTIRARLLY 409
>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 27.5 bits (61), Expect = 9.9
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 331 SPLAGTEGDKVTSRMIRDRLFKE-AEGNIALKIEESSSKDAFFVSGRGELQLAVLIETMR 389
SPL+G K+T + I + L +G + + +D L + ++
Sbjct: 1058 SPLSGDALRKITPQTIAEELLTHYTKGYVTITSPIPKEED-----------LFIYLQEKL 1106
Query: 390 REGF 393
+EGF
Sbjct: 1107 KEGF 1110
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.138 0.390
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 10,379,458
Number of extensions: 710806
Number of successful extensions: 1581
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1474
Number of HSP's successfully gapped: 107
Length of query: 624
Length of database: 5,994,473
Length adjustment: 99
Effective length of query: 525
Effective length of database: 3,855,281
Effective search space: 2024022525
Effective search space used: 2024022525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)