HHsearch alignment for GI: 254780234 and conserved domain: COG0482
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis].
Probab=99.72 E-value=1.9e-16 Score=138.25 Aligned_cols=238 Identities=24% Similarity=0.304 Sum_probs=150.4
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEECCC---------CCHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH
Q ss_conf 77899991477259999999987189869999945787---------110689999999739807998200899999879
Q gi|254780234|r 5 VKKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQ---------GEELKIASDKARLLGAKEVYVKDLRREFVRDFV 75 (404)
Q Consensus 5 ~kkVvlaySGGLDTSv~i~~L~~e~g~eVi~~~~d~Gq---------~~d~~~~~~~A~~~Ga~~~~v~D~r~ef~~~~i 75 (404)
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk-~QGyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGI-p~~~vdf~~~y~~~V~ 80 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLK-EQGYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGI-PLYVVDFEKEFWNKVF 80 (356)
T ss_pred CCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC-CEEEECHHHHHHHHHH
T ss_conf 7679999057778999999999-7697499999996414788867725678999999998099-5599846899888888
Q ss_pred HHHHHCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHCCCCEEECH--HHCCCCHHHHHHHHHHHHCCC-----------C
Q ss_conf 999736865478742013012-43359999999885689287500--111682156799999985879-----------7
Q gi|254780234|r 76 FPMFRANALYEGYYLLGTAIA-RPLIAKYLVDIANETGADAIAHG--STGKGNDQVRFELSAYSLNSD-----------I 141 (404)
Q Consensus 76 ~~~I~ana~Yeg~Ypl~tsla-Rplia~~lv~~a~~~ga~~iaHG--~TgkGNDQvRFe~~~~~l~P~-----------l 141 (404)
T Consensus 81 ~~f~~--~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~-~~~l-~r~~D~~KDQsYfL~~~~~ 156 (356)
T COG0482 81 EYFLA--EYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQREDEG-IELL-LRGVDLNKDQSYFLYALSQ 156 (356)
T ss_pred HHHHH--HHHCCCCCCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCC-CCCC-CCCCCCCCCHHHEECCCCH
T ss_conf 87789--985799999651048788999999999975998578744676543776-0001-4678742030002012688
Q ss_pred EEEEEECCC--CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCHHHCCCC
Q ss_conf 077441006--876379999999970896756656788641572431154576324584576820100146581227999
Q gi|254780234|r 142 EIIAPWRHW--SFKGRQDLIDFAEKHAIPIDKNKRGEAPFSIDTNLLHSSSEGRVLEDPSQPAPEYVYKMIVSPEEAPDT 219 (404)
Q Consensus 142 ~viaP~Rd~--~~~sRe~~i~ya~~~gIpv~~~~~~~~~yS~D~Nlwg~S~Egg~Ledp~~~~pe~~~~~t~~p~~ap~~ 219 (404)
T Consensus 157 ~ql~~~lFPlG~l-~K~evR~iA~~~gL~~a~Kk-----dS~~I---CFi~~~~~~---------~fl~~-----~~p~- 212 (356)
T COG0482 157 EQLERLLFPLGDL-EKLEVRPIAAEKGLPTAKKK-----DSQGI---CFIGERKFK---------DFLGR-----YLPA- 212 (356)
T ss_pred HHHHHCCCCCCCC-CHHHHHHHHHHCCCCCCCCC-----CCCCC---EECCCCCHH---------HHHHH-----HCCC-
T ss_conf 7775322567777-77899999997599766766-----67762---213787789---------99873-----1877-
Q ss_pred CEEEEEEEECCEEEEECCEECCHHH-HHHHHHHHHHHCCCCCEECC-CCCC---CCCCCCCCCCCHHH
Q ss_conf 6389999950247875162318999-99999888642163741000-7732---02100011137378
Q gi|254780234|r 220 PTTIRIDFQRGDPIAINGQVMSPEV-LLEQLNQYGRCNGIGRIDIV-ENRF---VGIKSRGVYETPGG 282 (404)
Q Consensus 220 pe~v~I~Fe~G~PVainG~~~~~~~-li~~LN~igg~~GvGr~d~v-Enr~---vG~KsR~vYEaPga 282 (404)
T Consensus 213 --------~~G~ii~~~G~v~g~H~G~~~y--TiGQR~Gl~I~~~~~~p~yVv~kd~~~n~~~V~~~~ 270 (356)
T COG0482 213 --------KPGEIIDKDGKVLGEHDGLMYY--TIGQRKGLGIGGLKGEPWYVVGKDLKKNRLYVGQGE 270 (356)
T ss_pred --------CCCEEEECCCCEEEECCCEEEE--ECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCH
T ss_conf --------8852792488180012877888--426633567688888877999871666759996404