HHsearch alignment for GI: 254780234 and conserved domain: PRK05406
>PRK05406 LamB/YcsF family protein; Provisional.
Probab=91.47 E-value=0.43 Score=28.14 Aligned_cols=146 Identities=17% Similarity=0.259 Sum_probs=93.8
Q ss_pred HHHHHHHHHCCCCE---EECHHHC--CCCHH--HH-HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999988568928---7500111--68215--67-99999985879707744100687637999999997089675665
Q gi|254780234|r 102 KYLVDIANETGADA---IAHGSTG--KGNDQ--VR-FELSAYSLNSDIEIIAPWRHWSFKGRQDLIDFAEKHAIPIDKNK 173 (404)
Q Consensus 102 ~~lv~~a~~~ga~~---iaHG~Tg--kGNDQ--vR-Fe~~~~~l~P~l~viaP~Rd~~~~sRe~~i~ya~~~gIpv~~~~ 173 (404)
T Consensus 93 ~~l~~~a~~~g~~l~hvKpHGALYn~~~~d~~~a~~i~~~i~~~~~~l~l~~~~-------~s~~~~~A~~~Gl~~~~E~ 165 (246)
T PRK05406 93 GALQAIARAAGGRVRHVKPHGALYNMAAKDPELADAIAEAVAAVDPSLILVGLA-------GSELIEAAKAAGLRTASEV 165 (246)
T ss_pred HHHHHHHHHCCCCCCEECCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECC-------CCHHHHHHHHCCCCEEEEE
T ss_conf 999999998499631324018999988459999999999999869995699518-------8199999998598189888
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCHHHCCCCCEEEEEEEECCEEEEECCEECCHHHHHHHHHHHH
Q ss_conf 67886415724311545763245845768201001465812279996389999950247875162318999999998886
Q gi|254780234|r 174 RGEAPFSIDTNLLHSSSEGRVLEDPSQPAPEYVYKMIVSPEEAPDTPTTIRIDFQRGDPIAINGQVMSPEVLLEQLNQYG 253 (404)
Q Consensus 174 ~~~~~yS~D~Nlwg~S~Egg~Ledp~~~~pe~~~~~t~~p~~ap~~pe~v~I~Fe~G~PVainG~~~~~~~li~~LN~ig 253 (404)
T Consensus 166 FADR~Y~~dG~Lv~R~~~gAvi~d~e~~~-~q~~~~~~~g~V~ti~G~~i~i~ad---TICvHgDtp~Av~iak~ir~~L 241 (246)
T PRK05406 166 FADRAYTADGTLVPRSQPGAVIHDPEEAA-AQVLQMVQEGRVTAIDGEWIPVEAD---TICVHGDGPHAVAFARRIRAAL 241 (246)
T ss_pred EECCCCCCCCCEEECCCCCCCCCCHHHHH-HHHHHHHHCCCEEECCCCEEECCCC---EEEECCCCHHHHHHHHHHHHHH
T ss_conf 40233789998700568776158999999-9999999779689238988760489---8998999978999999999999
Q ss_pred HHCCC
Q ss_conf 42163
Q gi|254780234|r 254 RCNGI 258 (404)
Q Consensus 254 g~~Gv 258 (404)
T Consensus 242 ~~~gI 246 (246)
T PRK05406 242 EAAGI 246 (246)
T ss_pred HHCCC
T ss_conf 97769