HHsearch alignment for GI: 254780234 and conserved domain: PRK05406

>PRK05406 LamB/YcsF family protein; Provisional.
Probab=91.47  E-value=0.43  Score=28.14  Aligned_cols=146  Identities=17%  Similarity=0.259  Sum_probs=93.8

Q ss_pred             HHHHHHHHHCCCCE---EECHHHC--CCCHH--HH-HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf             99999988568928---7500111--68215--67-99999985879707744100687637999999997089675665
Q gi|254780234|r  102 KYLVDIANETGADA---IAHGSTG--KGNDQ--VR-FELSAYSLNSDIEIIAPWRHWSFKGRQDLIDFAEKHAIPIDKNK  173 (404)
Q Consensus       102 ~~lv~~a~~~ga~~---iaHG~Tg--kGNDQ--vR-Fe~~~~~l~P~l~viaP~Rd~~~~sRe~~i~ya~~~gIpv~~~~  173 (404)
T Consensus        93 ~~l~~~a~~~g~~l~hvKpHGALYn~~~~d~~~a~~i~~~i~~~~~~l~l~~~~-------~s~~~~~A~~~Gl~~~~E~  165 (246)
T PRK05406         93 GALQAIARAAGGRVRHVKPHGALYNMAAKDPELADAIAEAVAAVDPSLILVGLA-------GSELIEAAKAAGLRTASEV  165 (246)
T ss_pred             HHHHHHHHHCCCCCCEECCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECC-------CCHHHHHHHHCCCCEEEEE
T ss_conf             999999998499631324018999988459999999999999869995699518-------8199999998598189888


Q ss_pred             CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCHHHCCCCCEEEEEEEECCEEEEECCEECCHHHHHHHHHHHH
Q ss_conf             67886415724311545763245845768201001465812279996389999950247875162318999999998886
Q gi|254780234|r  174 RGEAPFSIDTNLLHSSSEGRVLEDPSQPAPEYVYKMIVSPEEAPDTPTTIRIDFQRGDPIAINGQVMSPEVLLEQLNQYG  253 (404)
Q Consensus       174 ~~~~~yS~D~Nlwg~S~Egg~Ledp~~~~pe~~~~~t~~p~~ap~~pe~v~I~Fe~G~PVainG~~~~~~~li~~LN~ig  253 (404)
T Consensus       166 FADR~Y~~dG~Lv~R~~~gAvi~d~e~~~-~q~~~~~~~g~V~ti~G~~i~i~ad---TICvHgDtp~Av~iak~ir~~L  241 (246)
T PRK05406        166 FADRAYTADGTLVPRSQPGAVIHDPEEAA-AQVLQMVQEGRVTAIDGEWIPVEAD---TICVHGDGPHAVAFARRIRAAL  241 (246)
T ss_pred             EECCCCCCCCCEEECCCCCCCCCCHHHHH-HHHHHHHHCCCEEECCCCEEECCCC---EEEECCCCHHHHHHHHHHHHHH
T ss_conf             40233789998700568776158999999-9999999779689238988760489---8998999978999999999999


Q ss_pred             HHCCC
Q ss_conf             42163
Q gi|254780234|r  254 RCNGI  258 (404)
Q Consensus       254 g~~Gv  258 (404)
T Consensus       242 ~~~gI  246 (246)
T PRK05406        242 EAAGI  246 (246)
T ss_pred             HHCCC
T ss_conf             97769