HHsearch alignment for GI: 254780234 and conserved domain: PRK08384
>PRK08384 thiamine biosynthesis protein ThiI; Provisional.
Probab=97.16 E-value=0.03 Score=36.48 Aligned_cols=122 Identities=18% Similarity=0.218 Sum_probs=57.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHC-----CCEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 789999147725999999998718986999994578711068999999973-----980799820089999987999973
Q gi|254780234|r 6 KKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEELKIASDKARLL-----GAKEVYVKDLRREFVRDFVFPMFR 80 (404)
Q Consensus 6 kkVvlaySGGLDTSv~i~~L~~e~g~eVi~~~~d~Gq~~d~~~~~~~A~~~-----Ga~~~~v~D~r~ef~~~~i~~~I~ 80 (404)
T Consensus 180 Gk~l~LlSGGi-SPVA-a~~mmKRG~~v~~vhf~~~~-~~~~kv~~l~~~L~~y~~~~-~~~~~~~-------------- 241 (310)
T PRK08384 180 GKMVGLLSDEL-SAVA-IFLMMKRGVEVIPVHIGMGE-KNLEKVRKLWNQLKKYSYGS-KGRLVVV-------------- 241 (310)
T ss_pred CCEEEEECCCC-CHHH-HHHHHHCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHCCCC-CEEEEEE--------------
T ss_conf 84899953886-3999-99998569879999856887-89999999999999867998-4699996--------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECHH-HCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH
Q ss_conf 6865478742013012433599999998856892875001-116821567999999858797077441006876379999
Q gi|254780234|r 81 ANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGS-TGKGNDQVRFELSAYSLNSDIEIIAPWRHWSFKGRQDLI 159 (404)
Q Consensus 81 ana~Yeg~Ypl~tslaRplia~~lv~~a~~~ga~~iaHG~-TgkGNDQvRFe~~~~~l~P~l~viaP~Rd~~~~sRe~~i 159 (404)
T Consensus 242 ----------------~~--~~~a~~ia~~~~~~alvTGEsLGQVASQTl~nl~~i~~~~~~PVlRPLI--g~D-K~EII 300 (310)
T PRK08384 242 ----------------KN--FERVNKIIRDFGAKGVVKGLRPEQLASETLENIYEDSRMFDVPVYYPLI--ALP-DEYIE 300 (310)
T ss_pred ----------------CH--HHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCC-HHHHH
T ss_conf ----------------65--9999999998599899977412554545798899997304887303856--899-89999
Q ss_pred HHHHHHC
Q ss_conf 9999708
Q gi|254780234|r 160 DFAEKHA 166 (404)
Q Consensus 160 ~ya~~~g 166 (404)
T Consensus 301 ~~Ar~IG 307 (310)
T PRK08384 301 KVKEKIG 307 (310)
T ss_pred HHHHHCC
T ss_conf 9998638