HHsearch alignment for GI: 254780234 and conserved domain: TIGR00364

>TIGR00364 TIGR00364 exsB protein; InterPro: IPR004479 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Sinorhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA , . In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance . The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr ..
Probab=98.68  E-value=4.2e-08  Score=78.46  Aligned_cols=159  Identities=23%  Similarity=0.291  Sum_probs=105.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHCC--CEEEEEEEECCCC---CHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHH-HHHHCC
Q ss_conf             9991477259999999987189--8699999457871---106899999997398079982008999998799-997368
Q gi|254780234|r    9 VLAYSGGLDTSIILKWLQVEKG--LEVIVFIADLGQG---EELKIASDKARLLGAKEVYVKDLRREFVRDFVF-PMFRAN   82 (404)
Q Consensus         9 vlaySGGLDTSv~i~~L~~e~g--~eVi~~~~d~Gq~---~d~~~~~~~A~~~Ga~~~~v~D~r~ef~~~~i~-~~I~an   82 (404)
T Consensus         2 v~~lSGG~DStT~~~~a~~~-~GkyeV~a~TF~YGQR~H~~Ele~A~~ia~~Lgi~~~~~~Dl--~~l~~l~~YsaLt~~   78 (227)
T TIGR00364         2 VVVLSGGQDSTTVLLIALDE-GGKYEVHAITFDYGQRAHSRELESARKIAEALGIRHHFVIDL--SLLKQLGKYSALTDE   78 (227)
T ss_pred             EEEEECCHHHHHHHHHHHHC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECH--HHHHHHHCCCCCCCC
T ss_conf             68743734689999999961-795079985465013789999999999999808970786177--999855404523578


Q ss_pred             CCC-CCC------------CCCCCCHHHHHHH-HHHHHHHHHCCCCEEECHH------HCCCCHHHH---HHHHHH-H-H
Q ss_conf             654-787------------4201301243359-9999998856892875001------116821567---999999-8-5
Q gi|254780234|r   83 ALY-EGY------------YLLGTAIARPLIA-KYLVDIANETGADAIAHGS------TGKGNDQVR---FELSAY-S-L  137 (404)
Q Consensus        83 a~Y-eg~------------Ypl~tslaRplia-~~lv~~a~~~ga~~iaHG~------TgkGNDQvR---Fe~~~~-~-l  137 (404)
T Consensus        79 ~~~~~~~~~e~d~~~~~E~~p~tfVPgRN~~fl~~a~~yA~~~gA~~v~~G~~~~DfSgYPDCr~EFvka~n~~l~Lgn~  158 (227)
T TIGR00364        79 QEIPEQKSNEEDKEKALETLPNTFVPGRNLIFLSLAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKALNHALNLGNM  158 (227)
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             75676666532023565311333378047999999999888618425220010003657988868899999999997412


Q ss_pred             CCCCEE-----EEEECCCCCCCHHHHHHHHHHHC-----CCCCCCC
Q ss_conf             879707-----74410068763799999999708-----9675665
Q gi|254780234|r  138 NSDIEI-----IAPWRHWSFKGRQDLIDFAEKHA-----IPIDKNK  173 (404)
Q Consensus       138 ~P~l~v-----iaP~Rd~~~~sRe~~i~ya~~~g-----Ipv~~~~  173 (404)
T Consensus       159 ~~~v~i~Piql~aPL~--~l-tKaeiv~la~elGkk~l~lv~~~T~  201 (227)
T TIGR00364       159 LTPVEIRPIQLEAPLM--DL-TKAEIVKLADELGKKLLDLVIKETY  201 (227)
T ss_pred             CCCCEEEEEEEECCEE--EC-CHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             6881120246666701--26-9899999988735112311000111