HHsearch alignment for GI: 254780234 and conserved domain: TIGR00364
>TIGR00364 TIGR00364 exsB protein; InterPro: IPR004479 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Sinorhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA , . In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance . The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr ..
Probab=98.68 E-value=4.2e-08 Score=78.46 Aligned_cols=159 Identities=23% Similarity=0.291 Sum_probs=105.0
Q ss_pred EEEECCCHHHHHHHHHHHHHCC--CEEEEEEEECCCC---CHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHH-HHHHCC
Q ss_conf 9991477259999999987189--8699999457871---106899999997398079982008999998799-997368
Q gi|254780234|r 9 VLAYSGGLDTSIILKWLQVEKG--LEVIVFIADLGQG---EELKIASDKARLLGAKEVYVKDLRREFVRDFVF-PMFRAN 82 (404)
Q Consensus 9 vlaySGGLDTSv~i~~L~~e~g--~eVi~~~~d~Gq~---~d~~~~~~~A~~~Ga~~~~v~D~r~ef~~~~i~-~~I~an 82 (404)
T Consensus 2 v~~lSGG~DStT~~~~a~~~-~GkyeV~a~TF~YGQR~H~~Ele~A~~ia~~Lgi~~~~~~Dl--~~l~~l~~YsaLt~~ 78 (227)
T TIGR00364 2 VVVLSGGQDSTTVLLIALDE-GGKYEVHAITFDYGQRAHSRELESARKIAEALGIRHHFVIDL--SLLKQLGKYSALTDE 78 (227)
T ss_pred EEEEECCHHHHHHHHHHHHC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECH--HHHHHHHCCCCCCCC
T ss_conf 68743734689999999961-795079985465013789999999999999808970786177--999855404523578
Q ss_pred CCC-CCC------------CCCCCCHHHHHHH-HHHHHHHHHCCCCEEECHH------HCCCCHHHH---HHHHHH-H-H
Q ss_conf 654-787------------4201301243359-9999998856892875001------116821567---999999-8-5
Q gi|254780234|r 83 ALY-EGY------------YLLGTAIARPLIA-KYLVDIANETGADAIAHGS------TGKGNDQVR---FELSAY-S-L 137 (404)
Q Consensus 83 a~Y-eg~------------Ypl~tslaRplia-~~lv~~a~~~ga~~iaHG~------TgkGNDQvR---Fe~~~~-~-l 137 (404)
T Consensus 79 ~~~~~~~~~e~d~~~~~E~~p~tfVPgRN~~fl~~a~~yA~~~gA~~v~~G~~~~DfSgYPDCr~EFvka~n~~l~Lgn~ 158 (227)
T TIGR00364 79 QEIPEQKSNEEDKEKALETLPNTFVPGRNLIFLSLAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKALNHALNLGNM 158 (227)
T ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 75676666532023565311333378047999999999888618425220010003657988868899999999997412
Q ss_pred CCCCEE-----EEEECCCCCCCHHHHHHHHHHHC-----CCCCCCC
Q ss_conf 879707-----74410068763799999999708-----9675665
Q gi|254780234|r 138 NSDIEI-----IAPWRHWSFKGRQDLIDFAEKHA-----IPIDKNK 173 (404)
Q Consensus 138 ~P~l~v-----iaP~Rd~~~~sRe~~i~ya~~~g-----Ipv~~~~ 173 (404)
T Consensus 159 ~~~v~i~Piql~aPL~--~l-tKaeiv~la~elGkk~l~lv~~~T~ 201 (227)
T TIGR00364 159 LTPVEIRPIQLEAPLM--DL-TKAEIVKLADELGKKLLDLVIKETY 201 (227)
T ss_pred CCCCEEEEEEEECCEE--EC-CHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 6881120246666701--26-9899999988735112311000111