HHsearch alignment for GI: 254780234 and conserved domain: TIGR00420
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; InterPro: IPR004506 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (2.1.1.61 from EC) catalyses the addition of 5-methylaminomethyl-2-thiouridylate to tRNAs using S-adenosyl-L-methionine as a substrate and releasing S-adenosyl-L-homocysteine. The enzyme is cytoplasmic and is involved in tRNA processing.; GO: 0004808 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=99.40 E-value=4.7e-12 Score=106.83 Aligned_cols=186 Identities=22% Similarity=0.324 Sum_probs=129.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEECC------C----------------CCHHHHHHHHHHHCCCEEEEE
Q ss_conf 789999147725999999998718986999994578------7----------------110689999999739807998
Q gi|254780234|r 6 KKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLG------Q----------------GEELKIASDKARLLGAKEVYV 63 (404)
Q Consensus 6 kkVvlaySGGLDTSv~i~~L~~e~g~eVi~~~~d~G------q----------------~~d~~~~~~~A~~~Ga~~~~v 63 (404)
T Consensus 1 ~kv~VglSGGVDSSVsA~lL~-~qg~~v~G~ylk~W~~~~~~d~~GH~~~N~~K~~C~~~~dl~~a~~ic~~LGi-~l~~ 78 (394)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLK-QQGYEVVGVYLKNWDEDEKNDILGHKKINENKSGCSSAEDLRDAQAICEKLGI-PLEK 78 (394)
T ss_pred CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-CEEE
T ss_conf 948998068547899999997-14965899987765124666644316562467788368879999999985598-1898
Q ss_pred ECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHC---CCCEEECH--H-HC-CCCHHHHHHHHHH
Q ss_conf 2008999998799997368654787420130124335-99999998856---89287500--1-11-6821567999999
Q gi|254780234|r 64 KDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLI-AKYLVDIANET---GADAIAHG--S-TG-KGNDQVRFELSAY 135 (404)
Q Consensus 64 ~D~r~ef~~~~i~~~I~ana~Yeg~Ypl~tslaRpli-a~~lv~~a~~~---ga~~iaHG--~-Tg-kGNDQvRFe~~~~ 135 (404)
T Consensus 79 ~nf~~~Y~~~Vf~~~i~--~y~~G~TPnPDi~CN~~iKFG~~~e~~~~~~Gtg~~~~aTGHYAr~~q~~~~~~~~~L~-~ 155 (394)
T TIGR00420 79 VNFQKEYWNKVFEPFIQ--EYKEGLTPNPDILCNKLIKFGLLLEYAKQLLGTGNDKIATGHYARIAQEIENKSLFELL-R 155 (394)
T ss_pred ECHHHHHHHHHHHHHHH--HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHCCCCHHHHH-C
T ss_conf 55078878888899999--87367777862004712003789999998528995434424476544342131014443-0
Q ss_pred HHCCC-----------C----EEEEEECCCCCCCHHHHHHHHHHHC--CCCCCCCCCCCCCCCCHHHHCCC-CCCCCCCC
Q ss_conf 85879-----------7----0774410068763799999999708--96756656788641572431154-57632458
Q gi|254780234|r 136 SLNSD-----------I----EIIAPWRHWSFKGRQDLIDFAEKHA--IPIDKNKRGEAPFSIDTNLLHSS-SEGRVLED 197 (404)
Q Consensus 136 ~l~P~-----------l----~viaP~Rd~~~~sRe~~i~ya~~~g--Ipv~~~~~~~~~yS~D~Nlwg~S-~Egg~Led 197 (404)
T Consensus 156 ~~D~~KDQSYFL~~l~~~~~~~~~FPlG--~L~-K~~vR~iA~~~~PfL~ta~tk----KDSqgICFig~~qhGGkf~dF 228 (394)
T TIGR00420 156 ALDKNKDQSYFLYHLSQEQLAKLLFPLG--ELL-KPEVRQIAKNAGPFLSTAETK----KDSQGICFIGERQHGGKFKDF 228 (394)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCC-CHHHHHHHHHCCCCCCCCCCC----CCCCCCEEECCCCCCCCHHHH
T ss_conf 4678886117376401898887505301--036-778999998648632344568----864450210351568846888
Q ss_pred CCCCCC
Q ss_conf 457682
Q gi|254780234|r 198 PSQPAP 203 (404)
Q Consensus 198 p~~~~p 203 (404)
T Consensus 229 Lk~Ylp 234 (394)
T TIGR00420 229 LKKYLP 234 (394)
T ss_pred HHHHCC
T ss_conf 764257