HHsearch alignment for GI: 254780234 and conserved domain: cd01995
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=99.00 E-value=2.5e-08 Score=80.04 Aligned_cols=131 Identities=26% Similarity=0.368 Sum_probs=91.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEECCCC--CHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCC
Q ss_conf 8999914772599999999871898699999457871--10689999999739807998200899999879999736865
Q gi|254780234|r 7 KVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQG--EELKIASDKARLLGAKEVYVKDLRREFVRDFVFPMFRANAL 84 (404)
Q Consensus 7 kVvlaySGGLDTSv~i~~L~~e~g~eVi~~~~d~Gq~--~d~~~~~~~A~~~Ga~~~~v~D~r~ef~~~~i~~~I~ana~ 84 (404)
T Consensus 1 kavvllSGGlDSt~~l~~~~-~~g~~v~~l~~dYGQr~~~E~~~a~~i~~~l~~~--~~VP~R----------------- 60 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAK-KEGYEVHALSFDYGQRHAKEEEAAKLIAEKLGPS--TYVPAR----------------- 60 (169)
T ss_pred CEEEEECCCHHHHHHHHHHH-HCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCC--CEECCC-----------------
T ss_conf 98999078788999999999-8499699999756985499999999999996899--465283-----------------
Q ss_pred CCCCCCCCCCHHHHHHH-HHHHHHHHHCCCCEEECHHHCC------CCHHH---HHHHHHHH-HCCCCEEEEEECCCCCC
Q ss_conf 47874201301243359-9999998856892875001116------82156---79999998-58797077441006876
Q gi|254780234|r 85 YEGYYLLGTAIARPLIA-KYLVDIANETGADAIAHGSTGK------GNDQV---RFELSAYS-LNSDIEIIAPWRHWSFK 153 (404)
Q Consensus 85 Yeg~Ypl~tslaRplia-~~lv~~a~~~ga~~iaHG~Tgk------GNDQv---RFe~~~~~-l~P~l~viaP~Rd~~~~ 153 (404)
T Consensus 61 -------------N~ifls~A~~~A~~~g~~~v~~G~~~~d~~~ypDc~~~F~~a~~~~~~~~~~~~v~i~aP~~~--~- 124 (169)
T cd01995 61 -------------NLIFLSIAAAYAEALGAEAIIIGVNAEDYSGYPDCRPEFIEAMNKALNLGTENGIKIHAPLID--L- 124 (169)
T ss_pred -------------HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCC--C-
T ss_conf -------------899999999999982999689998247756899986999999999998308798589843335--9-
Q ss_pred CHHHHHHHHHHHCCCCCCCC
Q ss_conf 37999999997089675665
Q gi|254780234|r 154 GRQDLIDFAEKHAIPIDKNK 173 (404)
Q Consensus 154 sRe~~i~ya~~~gIpv~~~~ 173 (404)
T Consensus 125 ~K~eiv~~g~~lgv~~~~T~ 144 (169)
T cd01995 125 SKAEIVRLGGELGVPLELTW 144 (169)
T ss_pred CHHHHHHHHHHCCCCHHHCC
T ss_conf 89999999988499799821