HHsearch alignment for GI: 254780234 and conserved domain: cd01995

>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=99.00  E-value=2.5e-08  Score=80.04  Aligned_cols=131  Identities=26%  Similarity=0.368  Sum_probs=91.9

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEECCCC--CHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCC
Q ss_conf             8999914772599999999871898699999457871--10689999999739807998200899999879999736865
Q gi|254780234|r    7 KVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQG--EELKIASDKARLLGAKEVYVKDLRREFVRDFVFPMFRANAL   84 (404)
Q Consensus         7 kVvlaySGGLDTSv~i~~L~~e~g~eVi~~~~d~Gq~--~d~~~~~~~A~~~Ga~~~~v~D~r~ef~~~~i~~~I~ana~   84 (404)
T Consensus         1 kavvllSGGlDSt~~l~~~~-~~g~~v~~l~~dYGQr~~~E~~~a~~i~~~l~~~--~~VP~R-----------------   60 (169)
T cd01995           1 KAVVLLSGGLDSTTCLAWAK-KEGYEVHALSFDYGQRHAKEEEAAKLIAEKLGPS--TYVPAR-----------------   60 (169)
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCC--CEECCC-----------------
T ss_conf             98999078788999999999-8499699999756985499999999999996899--465283-----------------


Q ss_pred             CCCCCCCCCCHHHHHHH-HHHHHHHHHCCCCEEECHHHCC------CCHHH---HHHHHHHH-HCCCCEEEEEECCCCCC
Q ss_conf             47874201301243359-9999998856892875001116------82156---79999998-58797077441006876
Q gi|254780234|r   85 YEGYYLLGTAIARPLIA-KYLVDIANETGADAIAHGSTGK------GNDQV---RFELSAYS-LNSDIEIIAPWRHWSFK  153 (404)
Q Consensus        85 Yeg~Ypl~tslaRplia-~~lv~~a~~~ga~~iaHG~Tgk------GNDQv---RFe~~~~~-l~P~l~viaP~Rd~~~~  153 (404)
T Consensus        61 -------------N~ifls~A~~~A~~~g~~~v~~G~~~~d~~~ypDc~~~F~~a~~~~~~~~~~~~v~i~aP~~~--~-  124 (169)
T cd01995          61 -------------NLIFLSIAAAYAEALGAEAIIIGVNAEDYSGYPDCRPEFIEAMNKALNLGTENGIKIHAPLID--L-  124 (169)
T ss_pred             -------------HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCC--C-
T ss_conf             -------------899999999999982999689998247756899986999999999998308798589843335--9-


Q ss_pred             CHHHHHHHHHHHCCCCCCCC
Q ss_conf             37999999997089675665
Q gi|254780234|r  154 GRQDLIDFAEKHAIPIDKNK  173 (404)
Q Consensus       154 sRe~~i~ya~~~gIpv~~~~  173 (404)
T Consensus       125 ~K~eiv~~g~~lgv~~~~T~  144 (169)
T cd01995         125 SKAEIVRLGGELGVPLELTW  144 (169)
T ss_pred             CHHHHHHHHHHCCCCHHHCC
T ss_conf             89999999988499799821