HHsearch results for GI: 254780234 and protein with PDBid: 1vbk_A
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.26.2.6 d.308.1.1
Probab=97.68 E-value=0.0007 Score=46.59 Aligned_cols=127 Identities=14% Similarity=0.183 Sum_probs=80.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCC
Q ss_conf 78999914772599999999871898699999457871106899999997398079982008999998799997368654
Q gi|254780234|r 6 KKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEELKIASDKARLLGAKEVYVKDLRREFVRDFVFPMFRANALY 85 (404)
Q Consensus 6 kkVvlaySGGLDTSv~i~~L~~e~g~eVi~~~~d~Gq~~d~~~~~~~A~~~Ga~~~~v~D~r~ef~~~~i~~~I~ana~Y 85 (404)
.|+++.+|||. |.|+ .||....|++|+.++.+.+ ++..+.+++-+..+ . .|
T Consensus 180 Gk~l~LlSGGi-SpVA-a~~~mKRG~~v~~v~f~~~-~~~~~kv~~l~~~l---------------~-----------~~ 230 (307)
T 1vbk_A 180 GRMIGILHDEL-SALA-IFLMMKRGVEVIPVYIGKD-DKNLEKVRSLWNLL---------------K-----------RY 230 (307)
T ss_dssp CEEEEECSSHH-HHHH-HHHHHHBTCEEEEEEESCS-SHHHHHHHHHHHHH---------------H-----------TT
T ss_pred CCEEEEECCCC-CHHH-HHHHHHCCCEEEEEEECCC-HHHHHHHHHHHHHH---------------H-----------HH
T ss_conf 83589833773-0999-9999966988999996897-88999999999999---------------9-----------75
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECH-HHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 7874201301243359999999885689287500-111682156799999985879707744100687637999999997
Q gi|254780234|r 86 EGYYLLGTAIARPLIAKYLVDIANETGADAIAHG-STGKGNDQVRFELSAYSLNSDIEIIAPWRHWSFKGRQDLIDFAEK 164 (404)
Q Consensus 86 eg~Ypl~tslaRplia~~lv~~a~~~ga~~iaHG-~TgkGNDQvRFe~~~~~l~P~l~viaP~Rd~~~~sRe~~i~ya~~ 164 (404)
.+.+-+-.-..++ -..++++|++.||.++..| |.|--..|. .++..-.-+-++.|+-|.- .|. -+|-|+.|++
T Consensus 231 ~~~~~~~~~~~~~--~~~~~~ia~~~~~~~ivtGeslgQVaSQt-~n~~~~~~~~~~pi~RPLi--g~D-K~EIi~~Ar~ 304 (307)
T 1vbk_A 231 SYGSKGFLVVAES--FDRVLKLIRDFGVKGVIKGLRPNDLNSEV-SEITEDFKMFPVPVYYPLI--ALP-EEYIKSVKER 304 (307)
T ss_dssp CTTSCCCCEEESS--HHHHHHHHHHHTCCEEECCCCGGGCCTTC-HHHHHHHHHCSSCEECHHH--HSC-HHHHHHHHHH
T ss_pred CCCCCEEEEECCC--HHHHHHHHHHCCCCEEEECCCHHHHHHHH-HHHHHHHHCCCCCCCCCCC--CCC-HHHHHHHHHH
T ss_conf 8998479997676--89999999984998999351525889999-9899998415987024837--899-8999999998
Q ss_pred HCC
Q ss_conf 089
Q gi|254780234|r 165 HAI 167 (404)
Q Consensus 165 ~gI 167 (404)
=|+
T Consensus 305 IGl 307 (307)
T 1vbk_A 305 LGL 307 (307)
T ss_dssp HTC
T ss_pred HCC
T ss_conf 686