HHsearch results for GI: 254780234 and protein with PDBid: 2der_A
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=99.73 E-value=2.9e-17 Score=142.62 Aligned_cols=168 Identities=23% Similarity=0.296 Sum_probs=121.5
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEECCCC----------CHHHHHHHHHHHCCCEEEEEECHHHHH
Q ss_conf 9877778999914772599999999871898699999457871----------106899999997398079982008999
Q gi|254780234|r 1 MSRDVKKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQG----------EELKIASDKARLLGAKEVYVKDLRREF 70 (404)
Q Consensus 1 M~~~~kkVvlaySGGLDTSv~i~~L~~e~g~eVi~~~~d~Gq~----------~d~~~~~~~A~~~Ga~~~~v~D~r~ef 70 (404)
|++.+|||++|+|||+||||++.+|+ ++||||+++++.++.. +|++++++.|..+|+ +++++|++++|
T Consensus 13 m~~~~kkV~V~mSGGVDSsvaa~lL~-~qG~~V~gv~m~~~~~~~~~~~c~~~~d~~~a~~va~~LgI-p~~~~d~~~~f 90 (380)
T 2der_A 13 MSETAKKVIVGMSGGVDSSVSAWLLQ-QQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGI-ELHTVNFAAEY 90 (380)
T ss_dssp ----CCEEEEECCSCSTTHHHHHHHH-TTCCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTC-CEEEEECHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHH-HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CEEEECHHHHH
T ss_conf 77668879998778699999999999-77996899999887688766788846789999999998499-77994508976
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHHHHHHH-HHHCCCCEEECH--H--------------HCCCCHHHHHHH
Q ss_conf 9987999973686547874201301243-359999999-885689287500--1--------------116821567999
Q gi|254780234|r 71 VRDFVFPMFRANALYEGYYLLGTAIARP-LIAKYLVDI-ANETGADAIAHG--S--------------TGKGNDQVRFEL 132 (404)
Q Consensus 71 ~~~~i~~~I~ana~Yeg~Ypl~tslaRp-lia~~lv~~-a~~~ga~~iaHG--~--------------TgkGNDQvRFe~ 132 (404)
.+..+-|.+.. .-.|..|+-+-.... +.-..+++. +++.||+.||.| + .-...||--|=
T Consensus 91 ~~~V~~~f~~~--y~~G~TPNPcv~CN~~iKf~~ll~~a~~~~g~d~iATGHYAr~~~~~~~~~L~r~~D~~KDQSYfL- 167 (380)
T 2der_A 91 WDNVFELFLAE--YKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFL- 167 (380)
T ss_dssp HHHTHHHHHHH--HHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEEEETTEEEEECCSSTTTCCGGGG-
T ss_pred HHHHHHHHHHH--HHCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCEEECCEEEEEECCCCCEEEEECCCCCCCCEEEE-
T ss_conf 22245777999--875899985401133322899999999866998560003799975899577885277777844676-
Q ss_pred HHHHHCCC--CEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 99985879--7077441006876379999999970896756656788641572
Q gi|254780234|r 133 SAYSLNSD--IEIIAPWRHWSFKGRQDLIDFAEKHAIPIDKNKRGEAPFSIDT 183 (404)
Q Consensus 133 ~~~~l~P~--l~viaP~Rd~~~~sRe~~i~ya~~~gIpv~~~~~~~~~yS~D~ 183 (404)
..|.++ -+++-|.-+ ++ .+|--+.|+++|+|+.. ++-|.|-
T Consensus 168 --~~l~~~~L~~~~FPLG~--~~-K~eVR~iA~~~gl~~a~-----K~dSq~I 210 (380)
T 2der_A 168 --YTLSHEQIAQSLFPVGE--LE-KPQVRKIAEDLGLVTAK-----KKDSTGI 210 (380)
T ss_dssp --SSCCHHHHHHEECCGGG--SC-HHHHHHHHHHTTCC---------------
T ss_pred --EEECHHHHCCEEECCCC--CC-HHHHHHHHHHCCCCCCC-----CCCCCCC
T ss_conf --54357650554768978--85-57899999986997567-----5566674