RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780234|ref|YP_003064647.1| argininosuccinate synthase
[Candidatus Liberibacter asiaticus str. psy62]
(404 letters)
>gnl|CDD|30486 COG0137, ArgG, Argininosuccinate synthase [Amino acid transport and
metabolism].
Length = 403
Score = 566 bits (1460), Expect = e-162
Identities = 231/402 (57%), Positives = 294/402 (73%), Gaps = 6/402 (1%)
Query: 4 DVKKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQG-EELKIASDKARLLGAKEVY 62
VKKVVLAYSGGLDTS+ +KWL+ + G EVI AD+GQ E+L +KA LGA+E Y
Sbjct: 3 KVKKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQPEEDLDAIREKALELGAEEAY 62
Query: 63 VKDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGSTG 122
V D R EFV D++FP +ANALYEG Y LGTA+ARPLIAK LV+ A + GADA+AHG TG
Sbjct: 63 VIDAREEFVEDYIFPAIKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTG 122
Query: 123 KGNDQVRFELSAYSLNSDIEIIAPWRHWSFKGRQDLIDFAEKHAIPIDKNKRGEAPFSID 182
KGNDQVRFEL+ +LN D++IIAPWR W+ R++ I++AE+H IP+ K E P+SID
Sbjct: 123 KGNDQVRFELAILALNPDLKIIAPWREWNL-TREEEIEYAEEHGIPVKATK--EKPYSID 179
Query: 183 TNLLHSSSEGRVLEDPSQPAPEYVYKMIVSPEEAPDTPTTIRIDFQRGDPIAINGQVMSP 242
NL S EG LEDP PE Y+ VSPE+APD P + I F++G P+A+NG+ +SP
Sbjct: 180 ENLWGRSIEGGDLEDPWNEPPEDAYEWTVSPEDAPDEPEEVEIGFEKGVPVALNGEKLSP 239
Query: 243 EVLLEQLNQYGRCNGIGRIDIVENRFVGIKSRGVYETPGGTILLHAHRAIESISLDSGSA 302
L+ +LN+ +G+GRIDIVENR VGIKSR VYE PG TILL AHRA+ES++LD A
Sbjct: 240 VELILELNEIAGRHGVGRIDIVENRLVGIKSREVYEAPGATILLTAHRALESLTLDREEA 299
Query: 303 HLKD-DLMSRYASIVYQGFWFSPEREMLQALIDKSQEYVEGSITLKLYKGNVMVVGRESN 361
H KD +L +YA +VY G WFSP RE L+A ID++QE+V G + LKLYKGNV V+GR+S
Sbjct: 300 HFKDIELGPKYAELVYNGLWFSPLREALRAFIDETQEHVTGEVRLKLYKGNVYVIGRKSP 359
Query: 362 KSLYSDKLVTFEDDLDAYNQSDSEGFIKLHALRLRTLARRNK 403
SLYS++L T+E+ DA++Q D++GFIKLH LR + AR K
Sbjct: 360 NSLYSEELATYEEG-DAFDQRDAQGFIKLHGLRSKLAARVKK 400
>gnl|CDD|30186 cd01999, Argininosuccinate_Synthase, Argininosuccinate synthase.
The Argininosuccinate synthase is a urea cycle enzyme
that catalyzes the penultimate step in arginine
biosynthesis: the ATP-dependent ligation of citrulline
to aspartate to form argininosuccinate, AMP and
pyrophosphate . In humans, a defect in the AS gene
causes citrullinemia, a genetic disease characterized by
severe vomiting spells and mental retardation. AS is a
homotetrameric enzyme of chains of about 400 amino-acid
residues. An arginine seems to be important for the
enzyme's catalytic mechanism. The sequences of AS from
various prokaryotes, archaebacteria and eukaryotes show
significant similarity.
Length = 385
Score = 557 bits (1436), Expect = e-159
Identities = 223/388 (57%), Positives = 288/388 (74%), Gaps = 4/388 (1%)
Query: 8 VVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEEL-KIASDKARLLGAKEVYVKDL 66
VVLAYSGGLDTS+ILKWL+ + G EVI AD+GQ EE + +KA LGAK+ V DL
Sbjct: 1 VVLAYSGGLDTSVILKWLKEKGGYEVIAVTADVGQPEEEIEAIEEKALKLGAKKHVVVDL 60
Query: 67 RREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGSTGKGND 126
R EFV D++FP +ANALYEG Y LGTA+ARPLIAK LV++A E GADA+AHG TGKGND
Sbjct: 61 REEFVEDYIFPAIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTGKGND 120
Query: 127 QVRFELSAYSLNSDIEIIAPWRHWSFKGRQDLIDFAEKHAIPIDKNKRGEAPFSIDTNLL 186
QVRFEL+ Y+LN D++IIAPWR W F R++ I++AE+H IP+ K + P+SID NL
Sbjct: 121 QVRFELAFYALNPDLKIIAPWRDWEFLSREEEIEYAEEHGIPVPVTK--KKPYSIDENLW 178
Query: 187 HSSSEGRVLEDPSQPAPEYVYKMIVSPEEAPDTPTTIRIDFQRGDPIAINGQVMSPEVLL 246
S EG +LEDP PE Y+ VSPE+APD P + I+F++G P+A+NG+ + P L+
Sbjct: 179 GRSIEGGILEDPDNEPPEDAYEWTVSPEDAPDEPEYVEIEFEKGVPVALNGEKLDPVELI 238
Query: 247 EQLNQYGRCNGIGRIDIVENRFVGIKSRGVYETPGGTILLHAHRAIESISLDSGSAHLKD 306
+LN+ +G+GRIDIVENR +GIKSR VYE PG TIL+ AHR +ES++LD H KD
Sbjct: 239 LELNEIAGKHGVGRIDIVENRVIGIKSREVYEAPGATILIKAHRDLESLTLDREVLHFKD 298
Query: 307 DLMSRYASIVYQGFWFSPEREMLQALIDKSQEYVEGSITLKLYKGNVMVVGRESNKSLYS 366
+ +YA +VY G WFSP RE L+A IDK+QE V G++ LKLYKGNV+VVGRES SLYS
Sbjct: 299 IVDPKYAELVYNGLWFSPLREALEAFIDKTQERVNGTVRLKLYKGNVIVVGRESPNSLYS 358
Query: 367 DKLVTFEDDLDAYNQSDSEGFIKLHALR 394
++L ++++D ++Q D+EGFIK+H LR
Sbjct: 359 EELASYDED-GGFDQKDAEGFIKIHGLR 385
>gnl|CDD|109807 pfam00764, Arginosuc_synth, Arginosuccinate synthase. This family
contains a PP-loop motif.
Length = 389
Score = 497 bits (1281), Expect = e-141
Identities = 197/394 (50%), Positives = 274/394 (69%), Gaps = 6/394 (1%)
Query: 9 VLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQG-EELKIASDKARLLGAKEVYVKDLR 67
VLAYSGGLDTS+ + WL+ EK EVI D+GQG E+L A +KA LGA + YV D +
Sbjct: 1 VLAYSGGLDTSVCIPWLK-EKYYEVIAVAVDVGQGEEDLDEAREKALKLGAVKHYVIDAK 59
Query: 68 REFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGSTGKGNDQ 127
EFV D++FP +ANALYEG Y LGTA+ARPLIAK LV+ A + GADA+AHG TGKGNDQ
Sbjct: 60 EEFVEDYIFPAIKANALYEGRYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQ 119
Query: 128 VRFELSAYSLNSDIEIIAPWRHWSFKGRQDLIDFAEKHAIPIDKNKRGEAPFSIDTNLLH 187
VRFELS SL D+++IAP R + R++ I++A++ IPI K + P+SID NL
Sbjct: 120 VRFELSIRSLAPDLKVIAPVRDLNLT-REEEIEYAKEKGIPIPVTK--KKPYSIDENLWG 176
Query: 188 SSSEGRVLEDPSQPAPEYVYKMIVSPEEAPDTPTTIRIDFQRGDPIAINGQVMSPEVLLE 247
S EG +LEDP PE +Y+ P +APD P + I F++G P++++G+ +S L++
Sbjct: 177 RSIEGGILEDPWNAPPEDIYEWTKDPAKAPDEPEVVEIGFEKGVPVSLDGEPVSVLELIK 236
Query: 248 QLNQYGRCNGIGRIDIVENRFVGIKSRGVYETPGGTILLHAHRAIESISLDSGSAHLKDD 307
+LN+ +G+GRIDIVE+R VG+KSR +YE P T+L+ AHR +E+++L K
Sbjct: 237 ELNEIAGAHGVGRIDIVEDRLVGLKSREIYEAPAATVLITAHRDLENLTLTREVLRFKRI 296
Query: 308 LMSRYASIVYQGFWFSPEREMLQALIDKSQEYVEGSITLKLYKGNVMVVGRESNKSLYSD 367
+ +YA +VY G WFSP +E L A IDK+QE V G++ +KLYKG+ V+GRES SLY +
Sbjct: 297 VDQKYAELVYDGLWFSPLKEALDAFIDKTQERVTGTVRVKLYKGSARVLGRESPYSLYDE 356
Query: 368 KLVTFEDDLDAYNQSDSEGFIKLHALRLRTLARR 401
+LV++ D+ D ++Q+D+ GFIK+H L+ + ARR
Sbjct: 357 ELVSY-DEGDTFDQTDATGFIKIHGLQAKIYARR 389
>gnl|CDD|36918 KOG1706, KOG1706, KOG1706, Argininosuccinate synthase [Amino acid
transport and metabolism].
Length = 412
Score = 436 bits (1123), Expect = e-123
Identities = 202/409 (49%), Positives = 280/409 (68%), Gaps = 13/409 (3%)
Query: 1 MSRDVKKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEELKIASDKARLLGAKE 60
M K VVLAYSGGLDTS IL WL+ E+G EVI ++A++GQ E+ + A KA GAK+
Sbjct: 1 MMSSKKSVVLAYSGGLDTSCILAWLK-EQGYEVIAYLANVGQKEDFEEARKKALKSGAKK 59
Query: 61 VYVKDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGS 120
V V+D+R EFV DF++P +++ALYE YLLGT++ARP+IAK VD+A GA A++HG
Sbjct: 60 VVVEDVREEFVEDFIWPALQSSALYEDRYLLGTSLARPVIAKAQVDVAQREGAKAVSHGC 119
Query: 121 TGKGNDQVRFELSAYSLNSDIEIIAPWR----HWSFKGRQDLIDFAEKHAIPIDKNKRGE 176
TGKGNDQVRFEL+ YSL D+++IAPWR + FKGR+DL+++A++H IP+ +
Sbjct: 120 TGKGNDQVRFELTFYSLKPDVKVIAPWRMPEFYERFKGRKDLLEYAKQHGIPVPVTPK-- 177
Query: 177 APFSIDTNLLHSSSEGRVLEDPSQPAPEYVYKMIVSPEEAPDTPTTIRIDFQRGDPIAIN 236
P+S+D NL+H S E +LEDP P+ +YK+ V PE+APDTP + I+F++G P+ +
Sbjct: 178 NPWSMDENLMHISYEAGILEDPKNQPPKDMYKLTVDPEDAPDTPEILEIEFEKGVPVKLT 237
Query: 237 GQVMSPE-----VLLEQLNQYGRCNGIGRIDIVENRFVGIKSRGVYETPGGTILLHAHRA 291
L LN+ +G+GRIDIVENRF+G+KSRG+YETP GTIL HAH
Sbjct: 238 NVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLD 297
Query: 292 IESISLDSGSAHLKDDLMSRYASIVYQGFWFSPEREMLQALIDKSQEYVEGSITLKLYKG 351
+E ++D +KD L +YA +VY GFWFSPE E ++A I KSQE VEG + + +YKG
Sbjct: 298 LEGFTMDREVRKIKDGLGLKYAELVYTGFWFSPECESVRACIAKSQERVEGKVQVSVYKG 357
Query: 352 NVMVVGRESNKSLYSDKLVTFEDDLDAYNQSDSEGFIKLHALRLRTLAR 400
V ++GRES SLY+++LV+ + Y D+ GFI +++LRL+ R
Sbjct: 358 QVYILGRESPLSLYNEELVSM-NVQGDYEPIDATGFININSLRLKEYHR 405
>gnl|CDD|30386 COG0037, MesJ, Predicted ATPase of the PP-loop superfamily
implicated in cell cycle control [Cell division and
chromosome partitioning].
Length = 298
Score = 43.7 bits (102), Expect = 1e-04
Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 17/174 (9%)
Query: 6 KKVVLAYSGGLDTSIILKWL-QVEKGLEVIVFIADLGQG----EELKIASDKARLLGAKE 60
K+++A SGG D+ +L L ++ + +EV D G +E ++ LG
Sbjct: 22 YKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPL 81
Query: 61 VYVKDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLV-----DIANETGADA 115
+ + A LL IA+ L A + D ET
Sbjct: 82 IVERVTDDLGRETLDGKSICAACRRLRRGLL-YKIAKELGADKIATGHHLDDQAETFLMN 140
Query: 116 IAHGSTGKGNDQVRFELSAYSLNSDIEIIAPWRHWSFKGRQDLIDFAEKHAIPI 169
+ GS +G +R + II P + +++ +A++ +P
Sbjct: 141 LLRGSGLRG---LRGMPPKRPFEGGLLIIRPLLYVR---EKEIELYAKEKGLPY 188
>gnl|CDD|30830 COG0482, TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Translation, ribosomal structure and biogenesis].
Length = 356
Score = 42.5 bits (100), Expect = 2e-04
Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 24/129 (18%)
Query: 6 KKVVLAYSGGLDTSIILKWLQVEKGLEVI-VFIA---DLGQG-----EELKIASDKARLL 56
KKV++ SGG+D+S+ L+ E+G EVI +F+ + G G E+L+ A A L
Sbjct: 4 KKVLVGMSGGVDSSVAAYLLK-EQGYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQL 62
Query: 57 GAKEVYVKDLRREFVRDFVFPMFRANALYEGYYLLG-TAIA-----RPLIAKYLVDIANE 110
G +YV D +EF + VF F A Y G T + + K L+D A E
Sbjct: 63 GIP-LYVVDFEKEF-WNKVFEYFLA------EYKAGKTPNPCILCNKEIKFKALLDYAKE 114
Query: 111 TGADAIAHG 119
GAD IA G
Sbjct: 115 LGADYIATG 123
>gnl|CDD|31794 COG1606, COG1606, ATP-utilizing enzymes of the PP-loop superfamily
[General function prediction only].
Length = 269
Score = 40.7 bits (95), Expect = 7e-04
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 3 RDVKKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQ--GEELKIASDKARLLGAKE 60
++ KKVV+A+SGG+D+S++ K + G V+ D E++ A + A+ +G +
Sbjct: 15 KEKKKVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRH 74
Query: 61 VYVKDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGS 120
++K R + P F+ N Y + + LV+ A + G D +A G+
Sbjct: 75 EFIKMNRMD-------PEFKENPENRCYL------CKRAVYSTLVEEAEKRGYDVVADGT 121
Query: 121 TG 122
Sbjct: 122 NA 123
>gnl|CDD|30179 cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the
PP-loop faimly implicated in cell cycle control [Cell
division and chromosome partitioning]. This is a
subfamily of Adenine nucleotide alpha hydrolases
superfamily.Adeninosine nucleotide alpha hydrolases
superfamily includes N type ATP PPases and ATP
sulphurylases. It forms a apha/beta/apha fold which
binds to Adenosine group. This domain has a strongly
conserved motif SGGXD at the N terminus..
Length = 185
Score = 39.1 bits (91), Expect = 0.002
Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 40/183 (21%)
Query: 7 KVVLAYSGGLDTSI---ILKWLQVEKGLEVIVFIADLG-QGEELKIASDKARLLGAKEVY 62
K+++A SGG D+ +L L+ GL ++ D G + E + A+ +
Sbjct: 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPESDEEAA-----------F 49
Query: 63 VKDLRREF-VRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGST 121
V DL + + ++ + A A AR + +IA E GAD +
Sbjct: 50 VADLCAKLGIPLYILVVALAPKPGGNL----EAAAREARYDFFAEIAKEHGADVLLTAHH 105
Query: 122 GKGNDQVR------------FELSA---YSLNSDIEIIAPWRHWSFKGRQDLIDFAEKHA 166
+DQ L+ +I P + R ++ + ++
Sbjct: 106 --ADDQAETVLMRLLRGSGLRGLAGMPARIPFGGGRLIRPLLGIT---RAEIEAYLRENG 160
Query: 167 IPI 169
+P
Sbjct: 161 LPW 163
>gnl|CDD|30177 cd01990, Alpha_ANH_like_I, This is a subfamily of Adenine
nucleotide alpha hydrolases superfamily. Adenine
nucleotide alpha hydrolases superfamily includes N type
ATP PPases and ATP sulphurylases. It forms a
apha/beta/apha fold which binds to Adenosine group.
This subfamily of proteins probably binds ATP. This
domain is about 200 amino acids long with a strongly
conserved motif SGGKD at the N terminus..
Length = 202
Score = 39.1 bits (91), Expect = 0.003
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 8 VVLAYSGGLDTSIILKWLQVEKGLEVIVFIAD--LGQGEELKIASDKARLLGAKEVYVKD 65
V +A+SGG+D++++LK G V+ A L EL+ A A+ +G + ++
Sbjct: 1 VAVAFSGGVDSTLLLKAAVDALGDRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIE- 59
Query: 66 LRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGST 121
+ P F N Y + + + L +IA E G D + G+
Sbjct: 60 -----TDELDDPEFAKNPPDRCYL------CKKALYEALKEIAEELGLDVVLDGTN 104
>gnl|CDD|30185 cd01998, tRNA_Me_trans, tRNA methyl transferase. This family
represents
tRNA(5-methylaminomethyl-2-thiouridine)-
methyltransferase which is involved in the biosynthesis
of the modified nucleoside
5-methylaminomethyl-2-thiouridine present in the wobble
position of some tRNAs. This family of enzyme only
presents in bacteria and eukaryote. The archaeal
counterpart of this enzyme performs same function, but
is completely unrelated in sequence..
Length = 349
Score = 36.7 bits (85), Expect = 0.013
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 23/128 (17%)
Query: 7 KVVLAYSGGLDTSIILKWLQVEKGLEVI-VFIADLGQGEELKIASDKARLLGAKEV---- 61
KVV+A SGG+D+S+ L E+G EVI VF+ + + + + L A+ V
Sbjct: 1 KVVVAMSGGVDSSVAA-ALLKEQGYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQL 59
Query: 62 ----YVKDLRREFVRDFVFPMFRANALYEGYYLLGT-----AIARPLIA-KYLVDIANET 111
YV + +E+ P Y G + I L+D A +
Sbjct: 60 GIPHYVVNFEKEYWEKVFEPFLEE-------YKKGRTPNPDILCNKEIKFGALLDYAKKL 112
Query: 112 GADAIAHG 119
GAD IA G
Sbjct: 113 GADYIATG 120
>gnl|CDD|30948 COG0603, COG0603, Predicted PP-loop superfamily ATPase [General
function prediction only].
Length = 222
Score = 35.6 bits (82), Expect = 0.024
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 5 VKKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGE--ELKIASDKARLLGAKEVY 62
+KK V+ SGGLD++ L W ++G EV D GQ EL+ A + A+ LG
Sbjct: 2 MKKAVVLLSGGLDSTTCLAWA-KKEGYEVHALTFDYGQRHRKELEAAKELAKKLGVPHHI 60
Query: 63 VK-DLRREF 70
+ DL E
Sbjct: 61 IDVDLLGEI 69
>gnl|CDD|73293 cd01995, ExsB, ExsB is a transcription regulator related protein.
It is a subfamily of a Adenosine nucleotide binding
superfamily of proteins. This protein family is
represented by a single member in nearly every completed
large (> 1000 genes) prokaryotic genome. In Rhizobium
meliloti, a species in which the exo genes make
succinoglycan, a symbiotically important
exopolysaccharide, exsB is located nearby and affects
succinoglycan levels, probably through polar effects on
exsA expression or the same polycistronic mRNA. In
Arthrobacter viscosus, the homologous gene is designated
ALU1 and is associated with an aluminum tolerance
phenotype. The function is unknown.
Length = 169
Score = 34.4 bits (79), Expect = 0.052
Identities = 41/157 (26%), Positives = 53/157 (33%), Gaps = 44/157 (28%)
Query: 7 KVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQ--GEELKIASDKARLLGAKEVYVK 64
K V+ SGGLD++ L W ++G EV D GQ +E + A A LG YV
Sbjct: 1 KAVVLLSGGLDSTTCLAWA-KKEGYEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYV- 57
Query: 65 DLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAI---AHGST 121
P R N + L A A A GA+AI +
Sbjct: 58 ------------P-AR-NLI-----FLSIAAA----------YAEALGAEAIIIGVNAED 88
Query: 122 GKGNDQVRFE-------LSAYSLNSDIEIIAPWRHWS 151
G R E + I+I AP S
Sbjct: 89 YSGYPDCRPEFIEAMNKALNLGTENGIKIHAPLIDLS 125
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 34.2 bits (79), Expect = 0.066
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 2 SRDVKKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEELKIASDKARLLGAKEV 61
R +KK+ L GG + I+L ++ + F A + QG+ + A +
Sbjct: 219 GRHLKKITLEL-GGKNPLIVLADADLDYAVRAAAFGAFMHQGQI---------CMSASRI 268
Query: 62 YV-KDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHG 119
V + + EFV+ FV RA+ L G + PLI+ V+ DA+A G
Sbjct: 269 IVEEPVYDEFVKKFV---ARASKLKVGDPRDPDTVIGPLISPRQVERIKRQVEDAVAKG 324
>gnl|CDD|73292 cd01986, Alpha_ANH_like, Adenine nucleotide alpha hydrolases
superfamily including N type ATP PPases and ATP
sulphurylases. The domain forms a apha/beta/apha fold
which binds to Adenosine group...
Length = 103
Score = 31.7 bits (71), Expect = 0.37
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 8 VVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEELKIASDKAR 54
V++A+SGG D+S+ L+ + G +VI D G L+ A + A+
Sbjct: 1 VLVAFSGGKDSSVAAALLK-KLGYQVIAVTVDHGISPRLEDAKEIAK 46
>gnl|CDD|145938 pfam03054, tRNA_Me_trans, tRNA methyl transferase. This family
represents
tRNA(5-methylaminomethyl-2-thiouridine)-
methyltransferase which is involved in the biosynthesis
of the modified nucleoside
5-methylaminomethyl-2-thiouridine present in the wobble
position of some tRNAs.
Length = 354
Score = 31.4 bits (72), Expect = 0.42
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 6 KKVVLAYSGGLDTSIILKWLQVEKGLEVI-VFIA------DLGQG----EELKIASDKAR 54
KVV+A SGG+D+S+ +L E+G EVI VF+ + G G E+L A
Sbjct: 1 MKVVVAMSGGVDSSVAA-YLLKEQGYEVIGVFMKNWDEEDEFGHGCCSEEDLADAQRVCE 59
Query: 55 LLGAKEVYVKDLRREFVRDFVFPMFRA 81
LG +YV + +E+ P
Sbjct: 60 QLGIP-LYVVNFEKEYWEKVFEPFLDE 85
>gnl|CDD|73291 cd01984, AANH_like, Adenine nucleotide alpha hydrolases
superfamily including N type ATP PPases, ATP
sulphurylases Universal Stress Response protein and
electron transfer flavoprotein (ETF). The domain forms
a apha/beta/apha fold which binds to Adenosine
nucleotide..
Length = 86
Score = 31.6 bits (71), Expect = 0.46
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 8 VVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEELKIASDKARLLGAK 59
+++A SGGLD+S++L + K V L ++I A GA
Sbjct: 1 ILVALSGGLDSSVLLHLAKRLKSGGPEVVA--LVVVAFVRILKRLAAEEGAD 50
>gnl|CDD|144677 pfam01171, ATP_bind_3, PP-loop family. This family of proteins
belongs to the PP-loop superfamily.
Length = 182
Score = 29.1 bits (66), Expect = 2.0
Identities = 37/183 (20%), Positives = 67/183 (36%), Gaps = 42/183 (22%)
Query: 7 KVVLAYSGGLDTSIILKWL---QVEKGLEVIVFIADLGQGEELKIASDKARLLGAKEVYV 63
K+++A SGG D+ +L L + + G+++ D G EE SD+ A+ V
Sbjct: 1 KILVAVSGGPDSMALLYLLKKLKPKFGIDLTAAHVDHGLREE----SDRE----AQFV-- 50
Query: 64 KDLRREFVRDFVFPMFRANALYEGYYLLGT-AIARPLIAKYLVDIANETGAD--AIAHGS 120
+E R P+ L AR + +IA + GA+ AH
Sbjct: 51 ----KELCRQLNIPLEVLRVDVAKKSGLNLEEAAREARYDFFEEIAKKNGAEVLLTAH-- 104
Query: 121 TGKGNDQV------------RFELSA---YSLNSDIEIIAPWRHWSFKGRQDLIDFAEKH 165
+DQ L+ + I+ P + + ++ ++ ++H
Sbjct: 105 --HADDQAETFLMRLLRGSGLAGLAGIAPVRPLAGGRIVRPLLKVT---KSEIEEYLKEH 159
Query: 166 AIP 168
IP
Sbjct: 160 GIP 162
>gnl|CDD|144844 pfam01401, Peptidase_M2, Angiotensin-converting enzyme. Members of
this family are dipeptidyl carboxydipeptidases (cleave
carboxyl dipeptides) and most notably convert
angiotensin I to angiotensin II. Many members of this
family contain a tandem duplication of the 600 amino
acid peptidase domain, both of these are catalytically
active. Most members are secreted membrane bound
ectoenzymes.
Length = 595
Score = 29.1 bits (65), Expect = 2.3
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 337 QEYVEGSITLKLYKGNVMVVGRESNKSLYSDKLVTFEDDLDAYNQSDSEGFIKLHALRLR 396
+YVE ++ + + N +S +S Y T E DL+ Q ++ LHA R
Sbjct: 170 PKYVE--LSNEAARLNGYTDAGDSWRSWYESP--TLEQDLERLYQELQPLYLNLHAYVRR 225
Query: 397 TLARR 401
L R
Sbjct: 226 ALHRH 230
>gnl|CDD|144363 pfam00733, Asn_synthase, Asparagine synthase. This family is
always found associated with pfam00310. Members of this
family catalyse the conversion of aspartate to
asparagine.
Length = 195
Score = 28.7 bits (65), Expect = 2.5
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 1 MSRDVKKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGE--ELKIASDKARLLGA 58
+ DV V + SGGLD+S+I + + F + E A A LG
Sbjct: 14 LRADVP-VGVLLSGGLDSSLIAALAARQSSPPLKTFSVGFEGSDYDEAPYAELVADHLGT 72
Query: 59 KEVYVKDLRREFVRDF 74
+ E +
Sbjct: 73 DHHEIIVTEEELLDAL 88
>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase. L-idonate
5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion
of L-lodonate to 5-ketogluconate in the metabolism of
L-Idonate to 6-P-gluconate. In E. coli, this GntII
pathway is a subsidiary pathway to the canonical GntI
system, which also phosphorylates and transports
gluconate. L-ido 5-DH is found in an operon with a
regulator indR, transporter idnT, 5-keto-D-gluconate
5-reductase, and Gnt kinase. L-ido 5-DH is a
zinc-dependent alcohol dehydrogenase-like protein. The
alcohol dehydrogenase ADH-like family of proteins is a
diverse group of proteins related to the first
identified member, class I mammalian ADH. This group is
also called the medium chain dehydrogenases/reductase
family (MDR) which displays a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases(~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal GroES-like catalytic
domain. The MDR group contains a host of activities,
including the founding alcohol dehydrogenase (ADH),
quinone reductase, sorbitol dehydrogenase, formaldehyde
dehydrogenase, butanediol DH, ketose reductase, cinnamyl
reductase, and numerous others. The zinc-dependent
alcohol dehydrogenases (ADHs) catalyze the
NAD(P)(H)-dependent interconversion of alcohols to
aldehydes or ketones. ADH-like proteins typically form
dimers (typically higher plants, mammals) or tetramers
(yeast, bacteria), and generally have 2 tightly bound
zinc atoms per subunit. The active site zinc is
coordinated by a histidine, two cysteines, and a water
molecule. The second zinc seems to play a structural
role, affects subunit interactions, and is typically
coordinated by 4 cysteines.
Length = 339
Score = 28.4 bits (64), Expect = 3.8
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 28/96 (29%)
Query: 53 ARLLGAKEVYVKDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETG 112
AR GA E+ DL P+ A+AR + A V++A
Sbjct: 185 ARRAGAAEIVATDLAD-------APL---------------AVARAMGADETVNLAR--- 219
Query: 113 ADAIAHGSTGKGNDQVRFELS--AYSLNSDIEIIAP 146
D +A + KG+ V FE S +L S + ++ P
Sbjct: 220 -DPLAAYAADKGDFDVVFEASGAPAALASALRVVRP 254
>gnl|CDD|29614 cd01567, NAPRTase_PncB, Nicotinate phosphoribosyltransferase
(NAPRTase) family. Nicotinate phosphoribosyltransferase
catalyses the formation of NAMN and PPi from
5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic
acid, this is the first, and also rate limiting,
reaction in the NAD salvage synthesis. This salvage
pathway serves to recycle NAD degradation products..
Length = 343
Score = 27.6 bits (61), Expect = 6.2
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 1 MSRDVKKVVLAYSGGLDTSIILKWLQVEKGLEVIVF 36
+ D+ K + SG LDT ++ L + F
Sbjct: 288 LGIDLNKKKIIISGDLDTEEAIELLLEQGASPNDAF 323
>gnl|CDD|119380 cd06418, GH25_BacA-like, BacA is a bacterial lysin from
Enterococcus faecalis that degrades bacterial cell walls
by catalyzing the hydrolysis of 1,4-beta-linkages
between N-acetylmuramic acid and N-acetyl-D-glucosamine
residues. BacA is homologous to the YbfG and YkuG
lysins of Bacillus subtilis. BacA has a C-terminal
catalytic glycosyl hydrolase family 25 (GH25) domain and
an N-terminal peptidoglycan-binding domain comprised of
three alpha helices which is similar to a domain found
in matrixins..
Length = 212
Score = 27.7 bits (62), Expect = 6.6
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 24/151 (15%)
Query: 30 GLEVIVFIADLGQGEELKIASDKARLLGAKE---VYV---KDLRREFVRDFVFPMFRA-- 81
G + F + G ++ + A AR LG +Y D + V + + P FR
Sbjct: 76 GYSLDYFGYEQGV-KDARDAVAAARALGFPPGTIIYFAVDFDALDDEVTEVILPYFRGWN 134
Query: 82 NALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGSTGKGNDQVRFELSAYSLNSDI 141
+AL+E Y +G +R + ++ L A +A STG +S N
Sbjct: 135 DALHEAGYRIGIYGSRNVCSRVLAAAAGLAVVSFVADMSTG------------FSGNLGY 182
Query: 142 EIIAPWRHWSFKGRQDLIDFAEKHAIPIDKN 172
+ W+F + + AIPID N
Sbjct: 183 ---PLPKDWAFDQIAEYTIGSGGGAIPIDTN 210
>gnl|CDD|39559 KOG4358, KOG4358, KOG4358, Uncharacterized conserved protein
[Function unknown].
Length = 584
Score = 27.3 bits (60), Expect = 7.0
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 329 LQALIDKSQEYVEGSITLKLYKGNVMVVGRESNKSLYSDKLVTFEDDLDAYNQSDSE 385
LQ +DK + GS+ YK SLY TF + L+A
Sbjct: 517 LQEAVDKYSPRISGSLVDTSYKTLRFAFRASLKTSLYRITT-TFGEHLNALQAPAEH 572
>gnl|CDD|31556 COG1365, COG1365, Predicted ATPase (PP-loop superfamily) [General
function prediction only].
Length = 255
Score = 27.6 bits (61), Expect = 7.0
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Query: 4 DVKKVVLAYSGGLDTS---IILKWL 25
D K+ +AYSGG+D+S IIL+W
Sbjct: 59 DKPKIAVAYSGGVDSSASAIILRWA 83
>gnl|CDD|37167 KOG1956, KOG1956, KOG1956, DNA topoisomerase III alpha
[Replication, recombination and repair].
Length = 758
Score = 27.3 bits (60), Expect = 7.1
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 32 EVIVFIADLGQGEELKIASDKARLLGAKEVYVKDLRREFVRDFVFPMFRANALYEGYYLL 91
E+I + G G + IA ++ V K+ FV P F AL EGY +
Sbjct: 491 ELISLMDKNGIGTDATIAEHIEKIQERGYVTKKNKVGRFV-----PTFLGVALVEGYDDM 545
Query: 92 GTAIARPLIAKYLVDIANETGADAIAHGSTGKGNDQVRFELSAYS 136
G +++P + + E I+ G K + +R ++ Y
Sbjct: 546 GLEMSKPFLRAEM-----EVDLKNISDGRKDK-KEVLRDIVTKYR 584
>gnl|CDD|31701 COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase
type [General function prediction only].
Length = 271
Score = 27.2 bits (60), Expect = 7.7
Identities = 10/53 (18%), Positives = 16/53 (30%)
Query: 57 GAKEVYVKDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIAN 109
G + V +R+ + P FR G + L + L A
Sbjct: 119 GLEGVLTDAQAGRIIRETIAPAFRDGNYAGGLEAGIDRLVALLAGEPLPSPAR 171
>gnl|CDD|30178 cd01991, Asn_Synthase_B_C, The C-terminal domain of Asparagine
Synthase B. This domain is always found associated
n-terminal amidotransferase domain. Family members that
contain this domain catalyse the conversion of aspartate
to asparagine. Asparagine synthetase B catalyzes the
assembly of asparagine from aspartate, Mg(2+)ATP, and
glutamine. The three-dimensional architecture of the
N-terminal domain of asparagine synthetase B is similar
to that observed for glutamine
phosphoribosylpyrophosphate amidotransferase while the
molecular motif of the C-domain is reminiscent to that
observed for GMP synthetase ..
Length = 269
Score = 27.4 bits (60), Expect = 7.8
Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 4/122 (3%)
Query: 1 MSRDVKKVVLAYSGGLDTSIILKWL--QVEKGLEVIVFIADLGQGEELKIASDKARLLGA 58
+ DV V + SGGLD+S++ + + ++ +E + A A LG
Sbjct: 12 LRSDVP-VGVLLSGGLDSSLVAALAARLLPEPVKTFSIGFGFEGSDEREYARRVAEHLGT 70
Query: 59 KEVYVKDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIA-NETGADAIA 117
+ V+ + + ++ + + + + L K+ + + + GAD +
Sbjct: 71 EHHEVEFTPADLLAALPDVIWELDEPFADSSAIPLYLLSRLARKHGIKVVLSGEGADELF 130
Query: 118 HG 119
G
Sbjct: 131 GG 132
>gnl|CDD|31263 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent
dehydrogenases [Amino acid transport and metabolism /
General function prediction only].
Length = 350
Score = 27.3 bits (60), Expect = 7.9
Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 12/131 (9%)
Query: 53 ARLLGAKEVYVKDL---RREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVD--- 106
A+LLGA V V D R E ++ N + + A +++
Sbjct: 188 AKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247
Query: 107 --IANETGADAIAHGST----GKGNDQVRFELSAYSLNSDIEIIAPWRHWSFKGRQDLID 160
A + +A+ G T G + + ++ ++ + R + + +D
Sbjct: 248 SPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERALD 307
Query: 161 FAEKHAIPIDK 171
I +K
Sbjct: 308 LLASGKIDPEK 318
>gnl|CDD|37986 KOG2775, KOG2775, KOG2775, Metallopeptidase [General function
prediction only].
Length = 397
Score = 26.9 bits (59), Expect = 9.3
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 119 GSTGKGNDQVRFELSAYSLNSDIEIIAPWRHWSFKGRQDLID 160
GSTGKG E S Y N ++ + P R KG + ID
Sbjct: 286 GSTGKGYVHDDMECSHYMKNFELGHV-PLRLQRSKGLLNTID 326
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.318 0.137 0.393
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,885,573
Number of extensions: 265831
Number of successful extensions: 638
Number of sequences better than 10.0: 1
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 39
Length of query: 404
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 308
Effective length of database: 4,189,273
Effective search space: 1290296084
Effective search space used: 1290296084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)