RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780234|ref|YP_003064647.1| argininosuccinate synthase [Candidatus Liberibacter asiaticus str. psy62] (404 letters) >gnl|CDD|30486 COG0137, ArgG, Argininosuccinate synthase [Amino acid transport and metabolism]. Length = 403 Score = 566 bits (1460), Expect = e-162 Identities = 231/402 (57%), Positives = 294/402 (73%), Gaps = 6/402 (1%) Query: 4 DVKKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQG-EELKIASDKARLLGAKEVY 62 VKKVVLAYSGGLDTS+ +KWL+ + G EVI AD+GQ E+L +KA LGA+E Y Sbjct: 3 KVKKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQPEEDLDAIREKALELGAEEAY 62 Query: 63 VKDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGSTG 122 V D R EFV D++FP +ANALYEG Y LGTA+ARPLIAK LV+ A + GADA+AHG TG Sbjct: 63 VIDAREEFVEDYIFPAIKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTG 122 Query: 123 KGNDQVRFELSAYSLNSDIEIIAPWRHWSFKGRQDLIDFAEKHAIPIDKNKRGEAPFSID 182 KGNDQVRFEL+ +LN D++IIAPWR W+ R++ I++AE+H IP+ K E P+SID Sbjct: 123 KGNDQVRFELAILALNPDLKIIAPWREWNL-TREEEIEYAEEHGIPVKATK--EKPYSID 179 Query: 183 TNLLHSSSEGRVLEDPSQPAPEYVYKMIVSPEEAPDTPTTIRIDFQRGDPIAINGQVMSP 242 NL S EG LEDP PE Y+ VSPE+APD P + I F++G P+A+NG+ +SP Sbjct: 180 ENLWGRSIEGGDLEDPWNEPPEDAYEWTVSPEDAPDEPEEVEIGFEKGVPVALNGEKLSP 239 Query: 243 EVLLEQLNQYGRCNGIGRIDIVENRFVGIKSRGVYETPGGTILLHAHRAIESISLDSGSA 302 L+ +LN+ +G+GRIDIVENR VGIKSR VYE PG TILL AHRA+ES++LD A Sbjct: 240 VELILELNEIAGRHGVGRIDIVENRLVGIKSREVYEAPGATILLTAHRALESLTLDREEA 299 Query: 303 HLKD-DLMSRYASIVYQGFWFSPEREMLQALIDKSQEYVEGSITLKLYKGNVMVVGRESN 361 H KD +L +YA +VY G WFSP RE L+A ID++QE+V G + LKLYKGNV V+GR+S Sbjct: 300 HFKDIELGPKYAELVYNGLWFSPLREALRAFIDETQEHVTGEVRLKLYKGNVYVIGRKSP 359 Query: 362 KSLYSDKLVTFEDDLDAYNQSDSEGFIKLHALRLRTLARRNK 403 SLYS++L T+E+ DA++Q D++GFIKLH LR + AR K Sbjct: 360 NSLYSEELATYEEG-DAFDQRDAQGFIKLHGLRSKLAARVKK 400 >gnl|CDD|30186 cd01999, Argininosuccinate_Synthase, Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity. Length = 385 Score = 557 bits (1436), Expect = e-159 Identities = 223/388 (57%), Positives = 288/388 (74%), Gaps = 4/388 (1%) Query: 8 VVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEEL-KIASDKARLLGAKEVYVKDL 66 VVLAYSGGLDTS+ILKWL+ + G EVI AD+GQ EE + +KA LGAK+ V DL Sbjct: 1 VVLAYSGGLDTSVILKWLKEKGGYEVIAVTADVGQPEEEIEAIEEKALKLGAKKHVVVDL 60 Query: 67 RREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGSTGKGND 126 R EFV D++FP +ANALYEG Y LGTA+ARPLIAK LV++A E GADA+AHG TGKGND Sbjct: 61 REEFVEDYIFPAIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTGKGND 120 Query: 127 QVRFELSAYSLNSDIEIIAPWRHWSFKGRQDLIDFAEKHAIPIDKNKRGEAPFSIDTNLL 186 QVRFEL+ Y+LN D++IIAPWR W F R++ I++AE+H IP+ K + P+SID NL Sbjct: 121 QVRFELAFYALNPDLKIIAPWRDWEFLSREEEIEYAEEHGIPVPVTK--KKPYSIDENLW 178 Query: 187 HSSSEGRVLEDPSQPAPEYVYKMIVSPEEAPDTPTTIRIDFQRGDPIAINGQVMSPEVLL 246 S EG +LEDP PE Y+ VSPE+APD P + I+F++G P+A+NG+ + P L+ Sbjct: 179 GRSIEGGILEDPDNEPPEDAYEWTVSPEDAPDEPEYVEIEFEKGVPVALNGEKLDPVELI 238 Query: 247 EQLNQYGRCNGIGRIDIVENRFVGIKSRGVYETPGGTILLHAHRAIESISLDSGSAHLKD 306 +LN+ +G+GRIDIVENR +GIKSR VYE PG TIL+ AHR +ES++LD H KD Sbjct: 239 LELNEIAGKHGVGRIDIVENRVIGIKSREVYEAPGATILIKAHRDLESLTLDREVLHFKD 298 Query: 307 DLMSRYASIVYQGFWFSPEREMLQALIDKSQEYVEGSITLKLYKGNVMVVGRESNKSLYS 366 + +YA +VY G WFSP RE L+A IDK+QE V G++ LKLYKGNV+VVGRES SLYS Sbjct: 299 IVDPKYAELVYNGLWFSPLREALEAFIDKTQERVNGTVRLKLYKGNVIVVGRESPNSLYS 358 Query: 367 DKLVTFEDDLDAYNQSDSEGFIKLHALR 394 ++L ++++D ++Q D+EGFIK+H LR Sbjct: 359 EELASYDED-GGFDQKDAEGFIKIHGLR 385 >gnl|CDD|109807 pfam00764, Arginosuc_synth, Arginosuccinate synthase. This family contains a PP-loop motif. Length = 389 Score = 497 bits (1281), Expect = e-141 Identities = 197/394 (50%), Positives = 274/394 (69%), Gaps = 6/394 (1%) Query: 9 VLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQG-EELKIASDKARLLGAKEVYVKDLR 67 VLAYSGGLDTS+ + WL+ EK EVI D+GQG E+L A +KA LGA + YV D + Sbjct: 1 VLAYSGGLDTSVCIPWLK-EKYYEVIAVAVDVGQGEEDLDEAREKALKLGAVKHYVIDAK 59 Query: 68 REFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGSTGKGNDQ 127 EFV D++FP +ANALYEG Y LGTA+ARPLIAK LV+ A + GADA+AHG TGKGNDQ Sbjct: 60 EEFVEDYIFPAIKANALYEGRYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQ 119 Query: 128 VRFELSAYSLNSDIEIIAPWRHWSFKGRQDLIDFAEKHAIPIDKNKRGEAPFSIDTNLLH 187 VRFELS SL D+++IAP R + R++ I++A++ IPI K + P+SID NL Sbjct: 120 VRFELSIRSLAPDLKVIAPVRDLNLT-REEEIEYAKEKGIPIPVTK--KKPYSIDENLWG 176 Query: 188 SSSEGRVLEDPSQPAPEYVYKMIVSPEEAPDTPTTIRIDFQRGDPIAINGQVMSPEVLLE 247 S EG +LEDP PE +Y+ P +APD P + I F++G P++++G+ +S L++ Sbjct: 177 RSIEGGILEDPWNAPPEDIYEWTKDPAKAPDEPEVVEIGFEKGVPVSLDGEPVSVLELIK 236 Query: 248 QLNQYGRCNGIGRIDIVENRFVGIKSRGVYETPGGTILLHAHRAIESISLDSGSAHLKDD 307 +LN+ +G+GRIDIVE+R VG+KSR +YE P T+L+ AHR +E+++L K Sbjct: 237 ELNEIAGAHGVGRIDIVEDRLVGLKSREIYEAPAATVLITAHRDLENLTLTREVLRFKRI 296 Query: 308 LMSRYASIVYQGFWFSPEREMLQALIDKSQEYVEGSITLKLYKGNVMVVGRESNKSLYSD 367 + +YA +VY G WFSP +E L A IDK+QE V G++ +KLYKG+ V+GRES SLY + Sbjct: 297 VDQKYAELVYDGLWFSPLKEALDAFIDKTQERVTGTVRVKLYKGSARVLGRESPYSLYDE 356 Query: 368 KLVTFEDDLDAYNQSDSEGFIKLHALRLRTLARR 401 +LV++ D+ D ++Q+D+ GFIK+H L+ + ARR Sbjct: 357 ELVSY-DEGDTFDQTDATGFIKIHGLQAKIYARR 389 >gnl|CDD|36918 KOG1706, KOG1706, KOG1706, Argininosuccinate synthase [Amino acid transport and metabolism]. Length = 412 Score = 436 bits (1123), Expect = e-123 Identities = 202/409 (49%), Positives = 280/409 (68%), Gaps = 13/409 (3%) Query: 1 MSRDVKKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEELKIASDKARLLGAKE 60 M K VVLAYSGGLDTS IL WL+ E+G EVI ++A++GQ E+ + A KA GAK+ Sbjct: 1 MMSSKKSVVLAYSGGLDTSCILAWLK-EQGYEVIAYLANVGQKEDFEEARKKALKSGAKK 59 Query: 61 VYVKDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGS 120 V V+D+R EFV DF++P +++ALYE YLLGT++ARP+IAK VD+A GA A++HG Sbjct: 60 VVVEDVREEFVEDFIWPALQSSALYEDRYLLGTSLARPVIAKAQVDVAQREGAKAVSHGC 119 Query: 121 TGKGNDQVRFELSAYSLNSDIEIIAPWR----HWSFKGRQDLIDFAEKHAIPIDKNKRGE 176 TGKGNDQVRFEL+ YSL D+++IAPWR + FKGR+DL+++A++H IP+ + Sbjct: 120 TGKGNDQVRFELTFYSLKPDVKVIAPWRMPEFYERFKGRKDLLEYAKQHGIPVPVTPK-- 177 Query: 177 APFSIDTNLLHSSSEGRVLEDPSQPAPEYVYKMIVSPEEAPDTPTTIRIDFQRGDPIAIN 236 P+S+D NL+H S E +LEDP P+ +YK+ V PE+APDTP + I+F++G P+ + Sbjct: 178 NPWSMDENLMHISYEAGILEDPKNQPPKDMYKLTVDPEDAPDTPEILEIEFEKGVPVKLT 237 Query: 237 GQVMSPE-----VLLEQLNQYGRCNGIGRIDIVENRFVGIKSRGVYETPGGTILLHAHRA 291 L LN+ +G+GRIDIVENRF+G+KSRG+YETP GTIL HAH Sbjct: 238 NVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLD 297 Query: 292 IESISLDSGSAHLKDDLMSRYASIVYQGFWFSPEREMLQALIDKSQEYVEGSITLKLYKG 351 +E ++D +KD L +YA +VY GFWFSPE E ++A I KSQE VEG + + +YKG Sbjct: 298 LEGFTMDREVRKIKDGLGLKYAELVYTGFWFSPECESVRACIAKSQERVEGKVQVSVYKG 357 Query: 352 NVMVVGRESNKSLYSDKLVTFEDDLDAYNQSDSEGFIKLHALRLRTLAR 400 V ++GRES SLY+++LV+ + Y D+ GFI +++LRL+ R Sbjct: 358 QVYILGRESPLSLYNEELVSM-NVQGDYEPIDATGFININSLRLKEYHR 405 >gnl|CDD|30386 COG0037, MesJ, Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Cell division and chromosome partitioning]. Length = 298 Score = 43.7 bits (102), Expect = 1e-04 Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 17/174 (9%) Query: 6 KKVVLAYSGGLDTSIILKWL-QVEKGLEVIVFIADLGQG----EELKIASDKARLLGAKE 60 K+++A SGG D+ +L L ++ + +EV D G +E ++ LG Sbjct: 22 YKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPL 81 Query: 61 VYVKDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLV-----DIANETGADA 115 + + A LL IA+ L A + D ET Sbjct: 82 IVERVTDDLGRETLDGKSICAACRRLRRGLL-YKIAKELGADKIATGHHLDDQAETFLMN 140 Query: 116 IAHGSTGKGNDQVRFELSAYSLNSDIEIIAPWRHWSFKGRQDLIDFAEKHAIPI 169 + GS +G +R + II P + +++ +A++ +P Sbjct: 141 LLRGSGLRG---LRGMPPKRPFEGGLLIIRPLLYVR---EKEIELYAKEKGLPY 188 >gnl|CDD|30830 COG0482, TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]. Length = 356 Score = 42.5 bits (100), Expect = 2e-04 Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 24/129 (18%) Query: 6 KKVVLAYSGGLDTSIILKWLQVEKGLEVI-VFIA---DLGQG-----EELKIASDKARLL 56 KKV++ SGG+D+S+ L+ E+G EVI +F+ + G G E+L+ A A L Sbjct: 4 KKVLVGMSGGVDSSVAAYLLK-EQGYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQL 62 Query: 57 GAKEVYVKDLRREFVRDFVFPMFRANALYEGYYLLG-TAIA-----RPLIAKYLVDIANE 110 G +YV D +EF + VF F A Y G T + + K L+D A E Sbjct: 63 GIP-LYVVDFEKEF-WNKVFEYFLA------EYKAGKTPNPCILCNKEIKFKALLDYAKE 114 Query: 111 TGADAIAHG 119 GAD IA G Sbjct: 115 LGADYIATG 123 >gnl|CDD|31794 COG1606, COG1606, ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]. Length = 269 Score = 40.7 bits (95), Expect = 7e-04 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 15/122 (12%) Query: 3 RDVKKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQ--GEELKIASDKARLLGAKE 60 ++ KKVV+A+SGG+D+S++ K + G V+ D E++ A + A+ +G + Sbjct: 15 KEKKKVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRH 74 Query: 61 VYVKDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGS 120 ++K R + P F+ N Y + + LV+ A + G D +A G+ Sbjct: 75 EFIKMNRMD-------PEFKENPENRCYL------CKRAVYSTLVEEAEKRGYDVVADGT 121 Query: 121 TG 122 Sbjct: 122 NA 123 >gnl|CDD|30179 cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.. Length = 185 Score = 39.1 bits (91), Expect = 0.002 Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 40/183 (21%) Query: 7 KVVLAYSGGLDTSI---ILKWLQVEKGLEVIVFIADLG-QGEELKIASDKARLLGAKEVY 62 K+++A SGG D+ +L L+ GL ++ D G + E + A+ + Sbjct: 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPESDEEAA-----------F 49 Query: 63 VKDLRREF-VRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGST 121 V DL + + ++ + A A AR + +IA E GAD + Sbjct: 50 VADLCAKLGIPLYILVVALAPKPGGNL----EAAAREARYDFFAEIAKEHGADVLLTAHH 105 Query: 122 GKGNDQVR------------FELSA---YSLNSDIEIIAPWRHWSFKGRQDLIDFAEKHA 166 +DQ L+ +I P + R ++ + ++ Sbjct: 106 --ADDQAETVLMRLLRGSGLRGLAGMPARIPFGGGRLIRPLLGIT---RAEIEAYLRENG 160 Query: 167 IPI 169 +P Sbjct: 161 LPW 163 >gnl|CDD|30177 cd01990, Alpha_ANH_like_I, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.. Length = 202 Score = 39.1 bits (91), Expect = 0.003 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 14/116 (12%) Query: 8 VVLAYSGGLDTSIILKWLQVEKGLEVIVFIAD--LGQGEELKIASDKARLLGAKEVYVKD 65 V +A+SGG+D++++LK G V+ A L EL+ A A+ +G + ++ Sbjct: 1 VAVAFSGGVDSTLLLKAAVDALGDRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIE- 59 Query: 66 LRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGST 121 + P F N Y + + + L +IA E G D + G+ Sbjct: 60 -----TDELDDPEFAKNPPDRCYL------CKKALYEALKEIAEELGLDVVLDGTN 104 >gnl|CDD|30185 cd01998, tRNA_Me_trans, tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)- methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.. Length = 349 Score = 36.7 bits (85), Expect = 0.013 Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 23/128 (17%) Query: 7 KVVLAYSGGLDTSIILKWLQVEKGLEVI-VFIADLGQGEELKIASDKARLLGAKEV---- 61 KVV+A SGG+D+S+ L E+G EVI VF+ + + + + L A+ V Sbjct: 1 KVVVAMSGGVDSSVAA-ALLKEQGYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQL 59 Query: 62 ----YVKDLRREFVRDFVFPMFRANALYEGYYLLGT-----AIARPLIA-KYLVDIANET 111 YV + +E+ P Y G + I L+D A + Sbjct: 60 GIPHYVVNFEKEYWEKVFEPFLEE-------YKKGRTPNPDILCNKEIKFGALLDYAKKL 112 Query: 112 GADAIAHG 119 GAD IA G Sbjct: 113 GADYIATG 120 >gnl|CDD|30948 COG0603, COG0603, Predicted PP-loop superfamily ATPase [General function prediction only]. Length = 222 Score = 35.6 bits (82), Expect = 0.024 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Query: 5 VKKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGE--ELKIASDKARLLGAKEVY 62 +KK V+ SGGLD++ L W ++G EV D GQ EL+ A + A+ LG Sbjct: 2 MKKAVVLLSGGLDSTTCLAWA-KKEGYEVHALTFDYGQRHRKELEAAKELAKKLGVPHHI 60 Query: 63 VK-DLRREF 70 + DL E Sbjct: 61 IDVDLLGEI 69 >gnl|CDD|73293 cd01995, ExsB, ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown. Length = 169 Score = 34.4 bits (79), Expect = 0.052 Identities = 41/157 (26%), Positives = 53/157 (33%), Gaps = 44/157 (28%) Query: 7 KVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQ--GEELKIASDKARLLGAKEVYVK 64 K V+ SGGLD++ L W ++G EV D GQ +E + A A LG YV Sbjct: 1 KAVVLLSGGLDSTTCLAWA-KKEGYEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYV- 57 Query: 65 DLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAI---AHGST 121 P R N + L A A A GA+AI + Sbjct: 58 ------------P-AR-NLI-----FLSIAAA----------YAEALGAEAIIIGVNAED 88 Query: 122 GKGNDQVRFE-------LSAYSLNSDIEIIAPWRHWS 151 G R E + I+I AP S Sbjct: 89 YSGYPDCRPEFIEAMNKALNLGTENGIKIHAPLIDLS 125 >gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde. Length = 451 Score = 34.2 bits (79), Expect = 0.066 Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 14/119 (11%) Query: 2 SRDVKKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEELKIASDKARLLGAKEV 61 R +KK+ L GG + I+L ++ + F A + QG+ + A + Sbjct: 219 GRHLKKITLEL-GGKNPLIVLADADLDYAVRAAAFGAFMHQGQI---------CMSASRI 268 Query: 62 YV-KDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHG 119 V + + EFV+ FV RA+ L G + PLI+ V+ DA+A G Sbjct: 269 IVEEPVYDEFVKKFV---ARASKLKVGDPRDPDTVIGPLISPRQVERIKRQVEDAVAKG 324 >gnl|CDD|73292 cd01986, Alpha_ANH_like, Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group... Length = 103 Score = 31.7 bits (71), Expect = 0.37 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 8 VVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEELKIASDKAR 54 V++A+SGG D+S+ L+ + G +VI D G L+ A + A+ Sbjct: 1 VLVAFSGGKDSSVAAALLK-KLGYQVIAVTVDHGISPRLEDAKEIAK 46 >gnl|CDD|145938 pfam03054, tRNA_Me_trans, tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)- methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. Length = 354 Score = 31.4 bits (72), Expect = 0.42 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 13/87 (14%) Query: 6 KKVVLAYSGGLDTSIILKWLQVEKGLEVI-VFIA------DLGQG----EELKIASDKAR 54 KVV+A SGG+D+S+ +L E+G EVI VF+ + G G E+L A Sbjct: 1 MKVVVAMSGGVDSSVAA-YLLKEQGYEVIGVFMKNWDEEDEFGHGCCSEEDLADAQRVCE 59 Query: 55 LLGAKEVYVKDLRREFVRDFVFPMFRA 81 LG +YV + +E+ P Sbjct: 60 QLGIP-LYVVNFEKEYWEKVFEPFLDE 85 >gnl|CDD|73291 cd01984, AANH_like, Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.. Length = 86 Score = 31.6 bits (71), Expect = 0.46 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Query: 8 VVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEELKIASDKARLLGAK 59 +++A SGGLD+S++L + K V L ++I A GA Sbjct: 1 ILVALSGGLDSSVLLHLAKRLKSGGPEVVA--LVVVAFVRILKRLAAEEGAD 50 >gnl|CDD|144677 pfam01171, ATP_bind_3, PP-loop family. This family of proteins belongs to the PP-loop superfamily. Length = 182 Score = 29.1 bits (66), Expect = 2.0 Identities = 37/183 (20%), Positives = 67/183 (36%), Gaps = 42/183 (22%) Query: 7 KVVLAYSGGLDTSIILKWL---QVEKGLEVIVFIADLGQGEELKIASDKARLLGAKEVYV 63 K+++A SGG D+ +L L + + G+++ D G EE SD+ A+ V Sbjct: 1 KILVAVSGGPDSMALLYLLKKLKPKFGIDLTAAHVDHGLREE----SDRE----AQFV-- 50 Query: 64 KDLRREFVRDFVFPMFRANALYEGYYLLGT-AIARPLIAKYLVDIANETGAD--AIAHGS 120 +E R P+ L AR + +IA + GA+ AH Sbjct: 51 ----KELCRQLNIPLEVLRVDVAKKSGLNLEEAAREARYDFFEEIAKKNGAEVLLTAH-- 104 Query: 121 TGKGNDQV------------RFELSA---YSLNSDIEIIAPWRHWSFKGRQDLIDFAEKH 165 +DQ L+ + I+ P + + ++ ++ ++H Sbjct: 105 --HADDQAETFLMRLLRGSGLAGLAGIAPVRPLAGGRIVRPLLKVT---KSEIEEYLKEH 159 Query: 166 AIP 168 IP Sbjct: 160 GIP 162 >gnl|CDD|144844 pfam01401, Peptidase_M2, Angiotensin-converting enzyme. Members of this family are dipeptidyl carboxydipeptidases (cleave carboxyl dipeptides) and most notably convert angiotensin I to angiotensin II. Many members of this family contain a tandem duplication of the 600 amino acid peptidase domain, both of these are catalytically active. Most members are secreted membrane bound ectoenzymes. Length = 595 Score = 29.1 bits (65), Expect = 2.3 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%) Query: 337 QEYVEGSITLKLYKGNVMVVGRESNKSLYSDKLVTFEDDLDAYNQSDSEGFIKLHALRLR 396 +YVE ++ + + N +S +S Y T E DL+ Q ++ LHA R Sbjct: 170 PKYVE--LSNEAARLNGYTDAGDSWRSWYESP--TLEQDLERLYQELQPLYLNLHAYVRR 225 Query: 397 TLARR 401 L R Sbjct: 226 ALHRH 230 >gnl|CDD|144363 pfam00733, Asn_synthase, Asparagine synthase. This family is always found associated with pfam00310. Members of this family catalyse the conversion of aspartate to asparagine. Length = 195 Score = 28.7 bits (65), Expect = 2.5 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 3/76 (3%) Query: 1 MSRDVKKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGE--ELKIASDKARLLGA 58 + DV V + SGGLD+S+I + + F + E A A LG Sbjct: 14 LRADVP-VGVLLSGGLDSSLIAALAARQSSPPLKTFSVGFEGSDYDEAPYAELVADHLGT 72 Query: 59 KEVYVKDLRREFVRDF 74 + E + Sbjct: 73 DHHEIIVTEEELLDAL 88 >gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339 Score = 28.4 bits (64), Expect = 3.8 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 28/96 (29%) Query: 53 ARLLGAKEVYVKDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETG 112 AR GA E+ DL P+ A+AR + A V++A Sbjct: 185 ARRAGAAEIVATDLAD-------APL---------------AVARAMGADETVNLAR--- 219 Query: 113 ADAIAHGSTGKGNDQVRFELS--AYSLNSDIEIIAP 146 D +A + KG+ V FE S +L S + ++ P Sbjct: 220 -DPLAAYAADKGDFDVVFEASGAPAALASALRVVRP 254 >gnl|CDD|29614 cd01567, NAPRTase_PncB, Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.. Length = 343 Score = 27.6 bits (61), Expect = 6.2 Identities = 9/36 (25%), Positives = 15/36 (41%) Query: 1 MSRDVKKVVLAYSGGLDTSIILKWLQVEKGLEVIVF 36 + D+ K + SG LDT ++ L + F Sbjct: 288 LGIDLNKKKIIISGDLDTEEAIELLLEQGASPNDAF 323 >gnl|CDD|119380 cd06418, GH25_BacA-like, BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.. Length = 212 Score = 27.7 bits (62), Expect = 6.6 Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 24/151 (15%) Query: 30 GLEVIVFIADLGQGEELKIASDKARLLGAKE---VYV---KDLRREFVRDFVFPMFRA-- 81 G + F + G ++ + A AR LG +Y D + V + + P FR Sbjct: 76 GYSLDYFGYEQGV-KDARDAVAAARALGFPPGTIIYFAVDFDALDDEVTEVILPYFRGWN 134 Query: 82 NALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGSTGKGNDQVRFELSAYSLNSDI 141 +AL+E Y +G +R + ++ L A +A STG +S N Sbjct: 135 DALHEAGYRIGIYGSRNVCSRVLAAAAGLAVVSFVADMSTG------------FSGNLGY 182 Query: 142 EIIAPWRHWSFKGRQDLIDFAEKHAIPIDKN 172 + W+F + + AIPID N Sbjct: 183 ---PLPKDWAFDQIAEYTIGSGGGAIPIDTN 210 >gnl|CDD|39559 KOG4358, KOG4358, KOG4358, Uncharacterized conserved protein [Function unknown]. Length = 584 Score = 27.3 bits (60), Expect = 7.0 Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 1/57 (1%) Query: 329 LQALIDKSQEYVEGSITLKLYKGNVMVVGRESNKSLYSDKLVTFEDDLDAYNQSDSE 385 LQ +DK + GS+ YK SLY TF + L+A Sbjct: 517 LQEAVDKYSPRISGSLVDTSYKTLRFAFRASLKTSLYRITT-TFGEHLNALQAPAEH 572 >gnl|CDD|31556 COG1365, COG1365, Predicted ATPase (PP-loop superfamily) [General function prediction only]. Length = 255 Score = 27.6 bits (61), Expect = 7.0 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 3/25 (12%) Query: 4 DVKKVVLAYSGGLDTS---IILKWL 25 D K+ +AYSGG+D+S IIL+W Sbjct: 59 DKPKIAVAYSGGVDSSASAIILRWA 83 >gnl|CDD|37167 KOG1956, KOG1956, KOG1956, DNA topoisomerase III alpha [Replication, recombination and repair]. Length = 758 Score = 27.3 bits (60), Expect = 7.1 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 11/105 (10%) Query: 32 EVIVFIADLGQGEELKIASDKARLLGAKEVYVKDLRREFVRDFVFPMFRANALYEGYYLL 91 E+I + G G + IA ++ V K+ FV P F AL EGY + Sbjct: 491 ELISLMDKNGIGTDATIAEHIEKIQERGYVTKKNKVGRFV-----PTFLGVALVEGYDDM 545 Query: 92 GTAIARPLIAKYLVDIANETGADAIAHGSTGKGNDQVRFELSAYS 136 G +++P + + E I+ G K + +R ++ Y Sbjct: 546 GLEMSKPFLRAEM-----EVDLKNISDGRKDK-KEVLRDIVTKYR 584 >gnl|CDD|31701 COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]. Length = 271 Score = 27.2 bits (60), Expect = 7.7 Identities = 10/53 (18%), Positives = 16/53 (30%) Query: 57 GAKEVYVKDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIAN 109 G + V +R+ + P FR G + L + L A Sbjct: 119 GLEGVLTDAQAGRIIRETIAPAFRDGNYAGGLEAGIDRLVALLAGEPLPSPAR 171 >gnl|CDD|30178 cd01991, Asn_Synthase_B_C, The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .. Length = 269 Score = 27.4 bits (60), Expect = 7.8 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 1 MSRDVKKVVLAYSGGLDTSIILKWL--QVEKGLEVIVFIADLGQGEELKIASDKARLLGA 58 + DV V + SGGLD+S++ + + ++ +E + A A LG Sbjct: 12 LRSDVP-VGVLLSGGLDSSLVAALAARLLPEPVKTFSIGFGFEGSDEREYARRVAEHLGT 70 Query: 59 KEVYVKDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIA-NETGADAIA 117 + V+ + + ++ + + + + L K+ + + + GAD + Sbjct: 71 EHHEVEFTPADLLAALPDVIWELDEPFADSSAIPLYLLSRLARKHGIKVVLSGEGADELF 130 Query: 118 HG 119 G Sbjct: 131 GG 132 >gnl|CDD|31263 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]. Length = 350 Score = 27.3 bits (60), Expect = 7.9 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 12/131 (9%) Query: 53 ARLLGAKEVYVKDL---RREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVD--- 106 A+LLGA V V D R E ++ N + + A +++ Sbjct: 188 AKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 Query: 107 --IANETGADAIAHGST----GKGNDQVRFELSAYSLNSDIEIIAPWRHWSFKGRQDLID 160 A + +A+ G T G + + ++ ++ + R + + +D Sbjct: 248 SPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERALD 307 Query: 161 FAEKHAIPIDK 171 I +K Sbjct: 308 LLASGKIDPEK 318 >gnl|CDD|37986 KOG2775, KOG2775, KOG2775, Metallopeptidase [General function prediction only]. Length = 397 Score = 26.9 bits (59), Expect = 9.3 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 119 GSTGKGNDQVRFELSAYSLNSDIEIIAPWRHWSFKGRQDLID 160 GSTGKG E S Y N ++ + P R KG + ID Sbjct: 286 GSTGKGYVHDDMECSHYMKNFELGHV-PLRLQRSKGLLNTID 326 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.318 0.137 0.393 Gapped Lambda K H 0.267 0.0762 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,885,573 Number of extensions: 265831 Number of successful extensions: 638 Number of sequences better than 10.0: 1 Number of HSP's gapped: 618 Number of HSP's successfully gapped: 39 Length of query: 404 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 308 Effective length of database: 4,189,273 Effective search space: 1290296084 Effective search space used: 1290296084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.1 bits)