BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780234|ref|YP_003064647.1| argininosuccinate synthase
[Candidatus Liberibacter asiaticus str. psy62]
         (404 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780234|ref|YP_003064647.1| argininosuccinate synthase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 404

 Score =  827 bits (2136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/404 (100%), Positives = 404/404 (100%)

Query: 1   MSRDVKKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEELKIASDKARLLGAKE 60
           MSRDVKKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEELKIASDKARLLGAKE
Sbjct: 1   MSRDVKKVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEELKIASDKARLLGAKE 60

Query: 61  VYVKDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGS 120
           VYVKDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGS
Sbjct: 61  VYVKDLRREFVRDFVFPMFRANALYEGYYLLGTAIARPLIAKYLVDIANETGADAIAHGS 120

Query: 121 TGKGNDQVRFELSAYSLNSDIEIIAPWRHWSFKGRQDLIDFAEKHAIPIDKNKRGEAPFS 180
           TGKGNDQVRFELSAYSLNSDIEIIAPWRHWSFKGRQDLIDFAEKHAIPIDKNKRGEAPFS
Sbjct: 121 TGKGNDQVRFELSAYSLNSDIEIIAPWRHWSFKGRQDLIDFAEKHAIPIDKNKRGEAPFS 180

Query: 181 IDTNLLHSSSEGRVLEDPSQPAPEYVYKMIVSPEEAPDTPTTIRIDFQRGDPIAINGQVM 240
           IDTNLLHSSSEGRVLEDPSQPAPEYVYKMIVSPEEAPDTPTTIRIDFQRGDPIAINGQVM
Sbjct: 181 IDTNLLHSSSEGRVLEDPSQPAPEYVYKMIVSPEEAPDTPTTIRIDFQRGDPIAINGQVM 240

Query: 241 SPEVLLEQLNQYGRCNGIGRIDIVENRFVGIKSRGVYETPGGTILLHAHRAIESISLDSG 300
           SPEVLLEQLNQYGRCNGIGRIDIVENRFVGIKSRGVYETPGGTILLHAHRAIESISLDSG
Sbjct: 241 SPEVLLEQLNQYGRCNGIGRIDIVENRFVGIKSRGVYETPGGTILLHAHRAIESISLDSG 300

Query: 301 SAHLKDDLMSRYASIVYQGFWFSPEREMLQALIDKSQEYVEGSITLKLYKGNVMVVGRES 360
           SAHLKDDLMSRYASIVYQGFWFSPEREMLQALIDKSQEYVEGSITLKLYKGNVMVVGRES
Sbjct: 301 SAHLKDDLMSRYASIVYQGFWFSPEREMLQALIDKSQEYVEGSITLKLYKGNVMVVGRES 360

Query: 361 NKSLYSDKLVTFEDDLDAYNQSDSEGFIKLHALRLRTLARRNKV 404
           NKSLYSDKLVTFEDDLDAYNQSDSEGFIKLHALRLRTLARRNKV
Sbjct: 361 NKSLYSDKLVTFEDDLDAYNQSDSEGFIKLHALRLRTLARRNKV 404


>gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 408

 Score = 26.2 bits (56), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 20/128 (15%)

Query: 7   KVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEELKIASDKARLLGAKEVYVKDL 66
           +VV+A SGG+D+S++   L+   G +VI     L      K +  K      ++VY  D 
Sbjct: 22  RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVY--DA 76

Query: 67  RREF----VRDFVFPM---FRANAL--YEGYYLLGTA------IARPLIAKYLVDIANET 111
           RR      V  +VF     FR   +  +   Y  G          R +    L+ +  + 
Sbjct: 77  RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136

Query: 112 GADAIAHG 119
           GAD +A G
Sbjct: 137 GADVLATG 144


>gi|254780836|ref|YP_003065249.1| putative type I restriction-modification system DNA methylase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 674

 Score = 25.8 bits (55), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 299 SGSAHLKDDLMSRYASIVYQGFWFSPEREMLQAL 332
           +G A L+ D+  R  S ++Q FW    + M+Q +
Sbjct: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526


>537021.9.peg.1073_1 
          Length = 162

 Score = 23.5 bits (49), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 10/42 (23%), Positives = 23/42 (54%)

Query: 271 IKSRGVYETPGGTILLHAHRAIESISLDSGSAHLKDDLMSRY 312
           + +  +Y+ P G +++H +R + S +  + +A L D  M  +
Sbjct: 71  VATADIYDRPFGKVMVHPNRVMASNAETARNAFLIDPNMLEF 112


>gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 348

 Score = 23.1 bits (48), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 336 SQEYVEGSITLKLYKGNVMVVGRESNKSLYSDKLVTFEDD 375
           ++  + G   + +YK   +  G ESNK L S  +V+  +D
Sbjct: 202 AENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKSED 241


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.137    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 258,372
Number of Sequences: 1233
Number of extensions: 11029
Number of successful extensions: 26
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 8
length of query: 404
length of database: 328,796
effective HSP length: 76
effective length of query: 328
effective length of database: 235,088
effective search space: 77108864
effective search space used: 77108864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 39 (19.6 bits)