Query gi|254780235|ref|YP_003064648.1| hypothetical protein CLIBASIA_00600 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 74
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 24 00:42:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780235.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ati_A Glycyl-tRNA synthetase; 47.6 4.1 0.00017 20.0 0.6 28 46-74 5-38 (505)
2 2inp_E Phenol hydroxylase comp 26.1 14 0.00059 17.2 0.4 14 23-36 23-36 (118)
3 1fjk_A Cardiac phospholamban; 21.4 44 0.0019 14.5 3.0 23 38-60 28-51 (52)
4 2nlv_A XISI protein-like; XISI 11.0 73 0.0031 13.4 1.2 10 25-34 45-54 (112)
5 3d7q_A XISI protein-like; ZP_0 10.7 76 0.0032 13.3 1.2 10 25-34 45-54 (112)
6 2nwv_A XISI protein-like; YP_3 10.2 81 0.0034 13.2 1.2 10 25-34 47-56 (114)
7 2nvm_A FDXN element excision c 9.0 96 0.004 12.8 1.2 10 25-34 59-68 (126)
8 1f7d_A POL polyprotein; eight 8.6 61 0.0026 13.8 0.0 14 57-70 122-135 (136)
9 3oa1_A Phosphoprotein; seattle 7.6 1E+02 0.0043 12.6 0.8 7 64-70 151-157 (229)
10 2o5h_A Hypothetical protein; a 6.4 1.1E+02 0.0046 12.4 0.5 21 30-50 43-63 (136)
No 1
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA synthetase; 2.75A {Thermus thermophilus HB8} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=47.62 E-value=4.1 Score=19.99 Aligned_cols=28 Identities=32% Similarity=0.632 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHCC------CCCEEEEECC
Q ss_conf 9999999999964787247------8807786419
Q gi|254780235|r 46 MEKLVCLLLCVCGMLWFSS------SGIFAYLNIG 74 (74)
Q Consensus 46 meklvclllcvcgmlwfss------sgifaylnig 74 (74)
+||||- |+---|.++-+| |||++||-.|
T Consensus 5 ~~~~~~-l~~r~Gfi~~~~e~~~~~sGiy~~LPlG 38 (505)
T 1ati_A 5 LDELVA-LCKRRGFIFQSSEIYGGLQGVYDYGPLG 38 (505)
T ss_dssp HHHHHH-HHHHTTSEEETTGGGTCCTTCEEECHHH
T ss_pred HHHHHH-HHHHCCCEECCCHHCCCEEEEECCCHHH
T ss_conf 999999-9973787514610037703797558108
No 2
>2inp_E Phenol hydroxylase component PHO; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_E
Probab=26.09 E-value=14 Score=17.17 Aligned_cols=14 Identities=21% Similarity=0.700 Sum_probs=11.2
Q ss_pred CEEEEEECCCCEEE
Q ss_conf 10475523871777
Q gi|254780235|r 23 KDMYLGWDNNSMFI 36 (74)
Q Consensus 23 kdmylgwdnnsmfi 36 (74)
.-.|+|||.+-||-
T Consensus 23 ~LlyigWd~HllFc 36 (118)
T 2inp_E 23 QLLYVYWPDHLLFC 36 (118)
T ss_dssp EEEEEECTTCTTSC
T ss_pred EEEEEEECCCHHHC
T ss_conf 58996204113220
No 3
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=21.45 E-value=44 Score=14.53 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=15.4
Q ss_pred EHHHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 06799999999999999-996478
Q gi|254780235|r 38 KQEFFIFMMEKLVCLLL-CVCGML 60 (74)
Q Consensus 38 kqeffifmmeklvclll-cvcgml 60 (74)
-||.|+-.---|.|||| |.--||
T Consensus 28 lqelfvnf~lili~llliciivml 51 (52)
T 1fjk_A 28 LQNLFINFCLILIFLLLICIIVML 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999996
No 4
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 1.30A {Anabaena variabilis atcc 29413} SCOP: d.326.1.1
Probab=10.99 E-value=73 Score=13.40 Aligned_cols=10 Identities=30% Similarity=0.767 Sum_probs=7.2
Q ss_pred EEEEECCCCE
Q ss_conf 4755238717
Q gi|254780235|r 25 MYLGWDNNSM 34 (74)
Q Consensus 25 mylgwdnnsm 34 (74)
|.+||+|+.-
T Consensus 45 ~~~GW~~~~R 54 (112)
T 2nlv_A 45 MNVGWQGLNR 54 (112)
T ss_dssp EEEEEETTEE
T ss_pred EECCCCCCEE
T ss_conf 9903568848
No 5
>3d7q_A XISI protein-like; ZP_00106052.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.30A {Nostoc punctiforme pcc 73102}
Probab=10.69 E-value=76 Score=13.31 Aligned_cols=10 Identities=30% Similarity=0.933 Sum_probs=7.3
Q ss_pred EEEEECCCCE
Q ss_conf 4755238717
Q gi|254780235|r 25 MYLGWDNNSM 34 (74)
Q Consensus 25 mylgwdnnsm 34 (74)
|.+||+|+.-
T Consensus 45 ~~vGW~~~~R 54 (112)
T 3d7q_A 45 ISVGWNNQHR 54 (112)
T ss_dssp EEEEEETTEE
T ss_pred EECCCCCCEE
T ss_conf 9824668837
No 6
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Probab=10.17 E-value=81 Score=13.15 Aligned_cols=10 Identities=10% Similarity=0.577 Sum_probs=7.2
Q ss_pred EEEEECCCCE
Q ss_conf 4755238717
Q gi|254780235|r 25 MYLGWDNNSM 34 (74)
Q Consensus 25 mylgwdnnsm 34 (74)
|.+||+|+.-
T Consensus 47 ~~~GW~~~~R 56 (114)
T 2nwv_A 47 LAVDWQGSKR 56 (114)
T ss_dssp EEEEEETTEE
T ss_pred EECCCCCCEE
T ss_conf 9815668827
No 7
>2nvm_A FDXN element excision controlling factor XISI; YP_321976.1, structural genomics, PSI-2, protein structure initiative; 2.19A {Anabaena variabilis atcc 29413} SCOP: d.326.1.1
Probab=8.98 E-value=96 Score=12.77 Aligned_cols=10 Identities=30% Similarity=0.863 Sum_probs=7.2
Q ss_pred EEEEECCCCE
Q ss_conf 4755238717
Q gi|254780235|r 25 MYLGWDNNSM 34 (74)
Q Consensus 25 mylgwdnnsm 34 (74)
|.+||+|+.-
T Consensus 59 ~~vGW~~~~R 68 (126)
T 2nvm_A 59 LCCGWDGKKR 68 (126)
T ss_dssp EEEEEETTEE
T ss_pred EECCCCCCEE
T ss_conf 9814668837
No 8
>1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein, hydrolase; 1.40A {Feline immunodeficiency virus} SCOP: b.85.4.1 PDB: 1f7k_A* 1f7n_A* 1f7o_A 1f7p_A* 1f7q_A* 1f7r_A* 1dut_A
Probab=8.56 E-value=61 Score=13.81 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=8.6
Q ss_pred HHHHHHCCCCCEEE
Q ss_conf 64787247880778
Q gi|254780235|r 57 CGMLWFSSSGIFAY 70 (74)
Q Consensus 57 cgmlwfsssgifay 70 (74)
-|--=|.|+|++||
T Consensus 122 RG~~GfGSTG~~~~ 135 (136)
T 1f7d_A 122 RGDNGYGSTGVFSS 135 (136)
T ss_dssp --------------
T ss_pred CCCCCCCCCCCCCC
T ss_conf 67998863651436
No 9
>3oa1_A Phosphoprotein; seattle structural genomics center for infectious disease, R virus, protein degredation; 2.20A {Rabies virus strain pasteur vaccin}
Probab=7.65 E-value=1e+02 Score=12.64 Aligned_cols=7 Identities=71% Similarity=1.122 Sum_probs=0.0
Q ss_pred CCCCEEE
Q ss_conf 7880778
Q gi|254780235|r 64 SSGIFAY 70 (74)
Q Consensus 64 ssgifay 70 (74)
|||||-|
T Consensus 151 SSGIFL~ 157 (229)
T 3oa1_A 151 SSGILLY 157 (229)
T ss_dssp C--CEEE
T ss_pred CCCEEEE
T ss_conf 6635664
No 10
>2o5h_A Hypothetical protein; alpha-beta, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.90A {Neisseria meningitidis MC58} SCOP: d.363.1.1
Probab=6.36 E-value=1.1e+02 Score=12.45 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=0.0
Q ss_pred CCCCEEEEEHHHHHHHHHHHH
Q ss_conf 387177760679999999999
Q gi|254780235|r 30 DNNSMFILKQEFFIFMMEKLV 50 (74)
Q Consensus 30 dnnsmfilkqeffifmmeklv 50 (74)
|+.+-|-.+++.|.++++||.
T Consensus 43 d~~~~FeErk~~Ff~ll~kLL 63 (136)
T 2o5h_A 43 DFSSDFEEKTEAFFILFKELL 63 (136)
T ss_dssp GGCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
T ss_conf 240379999999999999999
Done!