Query gi|254780235|ref|YP_003064648.1| hypothetical protein CLIBASIA_00600 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 74
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Mon May 23 22:38:09 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780235.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nvma1 d.326.1.1 (A:2-118) Xi 10.3 46 0.0034 13.2 1.2 10 25-34 57-66 (117)
2 d2nlva1 d.326.1.1 (A:1-111) Hy 10.2 47 0.0034 13.2 1.2 10 25-34 44-53 (111)
3 d2nwva1 d.326.1.1 (A:2-113) Hy 10.1 47 0.0035 13.1 1.2 10 25-34 45-54 (112)
4 d2hjqa2 d.344.1.1 (A:1-49) Hyp 4.4 34 0.0025 13.9 -2.0 23 19-41 25-47 (49)
5 d1zbxb1 d.339.1.1 (B:485-613) 4.4 1.1E+02 0.0079 11.2 1.1 23 4-32 66-88 (129)
6 d2eifa1 b.34.5.2 (A:1-73) Euka 3.8 1.1E+02 0.0078 11.3 0.2 27 14-40 5-34 (73)
7 d1iz6a1 b.34.5.2 (A:2-70) Euka 3.7 1.1E+02 0.008 11.2 0.2 21 20-40 10-30 (69)
8 g6rlx.1 g.1.1.1 (B:,A:) Relaxi 3.2 1.4E+02 0.01 10.7 1.3 17 48-64 13-29 (51)
9 d2o5ha1 d.363.1.1 (A:1-131) Hy 3.0 1.5E+02 0.011 10.5 0.5 21 30-50 40-60 (131)
10 d1bkba1 b.34.5.2 (A:4-74) Euka 3.0 1.5E+02 0.011 10.5 0.3 21 21-41 14-34 (71)
No 1
>d2nvma1 d.326.1.1 (A:2-118) XisI {Anabaena variabilis [TaxId: 1172]}
Probab=10.27 E-value=46 Score=13.18 Aligned_cols=10 Identities=30% Similarity=0.863 Sum_probs=7.2
Q ss_pred EEEEECCCCE
Q ss_conf 4755238717
Q gi|254780235|r 25 MYLGWDNNSM 34 (74)
Q Consensus 25 mylgwdnnsm 34 (74)
|++||+++..
T Consensus 57 ~~vGW~~~~R 66 (117)
T d2nvma1 57 LCCGWDGKKR 66 (117)
T ss_dssp EEEEEETTEE
T ss_pred EECCCCCCEE
T ss_conf 9802558837
No 2
>d2nlva1 d.326.1.1 (A:1-111) Hypothetical protein Ava3825 {Anabaena variabilis [TaxId: 1172]}
Probab=10.20 E-value=47 Score=13.16 Aligned_cols=10 Identities=30% Similarity=0.767 Sum_probs=7.2
Q ss_pred EEEEECCCCE
Q ss_conf 4755238717
Q gi|254780235|r 25 MYLGWDNNSM 34 (74)
Q Consensus 25 mylgwdnnsm 34 (74)
|..||+|+.-
T Consensus 44 ~~~GW~~~~R 53 (111)
T d2nlva1 44 MNVGWQGLNR 53 (111)
T ss_dssp EEEEEETTEE
T ss_pred EEECCCCCEE
T ss_conf 9902458838
No 3
>d2nwva1 d.326.1.1 (A:2-113) Hypothetical protein Ava3320 {Anabaena variabilis [TaxId: 1172]}
Probab=10.07 E-value=47 Score=13.12 Aligned_cols=10 Identities=10% Similarity=0.577 Sum_probs=7.3
Q ss_pred EEEEECCCCE
Q ss_conf 4755238717
Q gi|254780235|r 25 MYLGWDNNSM 34 (74)
Q Consensus 25 mylgwdnnsm 34 (74)
|.+||+|+..
T Consensus 45 ~~~GW~~~~R 54 (112)
T d2nwva1 45 LAVDWQGSKR 54 (112)
T ss_dssp EEEEEETTEE
T ss_pred EECCCCCCEE
T ss_conf 9814558817
No 4
>d2hjqa2 d.344.1.1 (A:1-49) Hypothetical protein YqbF {Bacillus subtilis [TaxId: 1423]}
Probab=4.41 E-value=34 Score=13.91 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=16.2
Q ss_pred EEEECEEEEEECCCCEEEEEHHH
Q ss_conf 98611047552387177760679
Q gi|254780235|r 19 LSLKKDMYLGWDNNSMFILKQEF 41 (74)
Q Consensus 19 lslkkdmylgwdnnsmfilkqef 41 (74)
-...|..|--...|..|||.||.
T Consensus 25 qtvpkklyeylnenpyfiltqel 47 (49)
T d2hjqa2 25 QTVPKKLYEYLNENPYFILTQEL 47 (49)
T ss_dssp EEECHHHHHHHHHSTTEEEEECC
T ss_pred CCCCHHHHHHHCCCCEEEEEHHH
T ss_conf 10639999985579749963652
No 5
>d1zbxb1 d.339.1.1 (B:485-613) Regulatory protein SIR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.41 E-value=1.1e+02 Score=11.22 Aligned_cols=23 Identities=43% Similarity=0.667 Sum_probs=16.3
Q ss_pred HHHHHHHHHCCCEEEEEEECEEEEEECCC
Q ss_conf 56556444212537898611047552387
Q gi|254780235|r 4 KEIFLFSFCKAGTVFLSLKKDMYLGWDNN 32 (74)
Q Consensus 4 keiflfsfckagtvflslkkdmylgwdnn 32 (74)
+.--||.+|++ .++++|.+||..
T Consensus 66 ~~~~LF~~v~~------~~~~F~~~~Dg~ 88 (129)
T d1zbxb1 66 KAKTLFKFCKQ------IKKKFLRGADFK 88 (129)
T ss_dssp CCHHHHHHSCC------EEEEEEECTTSS
T ss_pred CCHHHHHHHHH------HHHHHHHCCCCC
T ss_conf 64799999889------999886125885
No 6
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.83 E-value=1.1e+02 Score=11.26 Aligned_cols=27 Identities=30% Similarity=0.262 Sum_probs=19.7
Q ss_pred CCEEEE---EEECEEEEEECCCCEEEEEHH
Q ss_conf 253789---861104755238717776067
Q gi|254780235|r 14 AGTVFL---SLKKDMYLGWDNNSMFILKQE 40 (74)
Q Consensus 14 agtvfl---slkkdmylgwdnnsmfilkqe 40 (74)
+||.-. .+|+.+|+-+|++-.-+++-+
T Consensus 5 ~~~~~i~~~~lKkG~~i~~~g~p~~V~e~~ 34 (73)
T d2eifa1 5 PGTKQVNVGSLKVGQYVMIDGVPCEIVDIS 34 (73)
T ss_dssp SSEEEEEGGGCCTTSEEEETTEEEEEEEEE
T ss_pred CCCEEEEHHHCCCCCEEEECCEEEEEEEEE
T ss_conf 653588799963888999999999999999
No 7
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.73 E-value=1.1e+02 Score=11.18 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=14.9
Q ss_pred EEECEEEEEECCCCEEEEEHH
Q ss_conf 861104755238717776067
Q gi|254780235|r 20 SLKKDMYLGWDNNSMFILKQE 40 (74)
Q Consensus 20 slkkdmylgwdnnsmfilkqe 40 (74)
.+|+.+|+-||+...-+++-+
T Consensus 10 ~lkkG~~i~~~g~p~~V~e~~ 30 (69)
T d1iz6a1 10 KLKPGRYIIIDDEPCRIVNIT 30 (69)
T ss_dssp GCCTTSEEEETTEEEEEEEEE
T ss_pred HCCCCCEEEECCEEEEEEEEE
T ss_conf 865888999999999999999
No 8
>g6rlx.1 g.1.1.1 (B:,A:) Relaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.24 E-value=1.4e+02 Score=10.65 Aligned_cols=17 Identities=29% Similarity=0.560 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999999964787247
Q gi|254780235|r 48 KLVCLLLCVCGMLWFSS 64 (74)
Q Consensus 48 klvclllcvcgmlwfss 64 (74)
.+|-+..-+|||-|.+.
T Consensus 13 e~vR~qi~iCG~s~w~~ 29 (51)
T g6rlx.1 13 ELVRAQIAICGMSTWEL 29 (51)
T ss_dssp HHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHCCCHHCC
T ss_conf 99999998626623402
No 9
>d2o5ha1 d.363.1.1 (A:1-131) Hypothetical protein NMB0513 {Neisseria meningitidis [TaxId: 487]}
Probab=3.00 E-value=1.5e+02 Score=10.51 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=0.0
Q ss_pred CCCCEEEEEHHHHHHHHHHHH
Q ss_conf 387177760679999999999
Q gi|254780235|r 30 DNNSMFILKQEFFIFMMEKLV 50 (74)
Q Consensus 30 dnnsmfilkqeffifmmeklv 50 (74)
|+.+-|--+++-|+|+++||.
T Consensus 40 d~~~sFeErk~~Ff~ll~kLl 60 (131)
T d2o5ha1 40 DFSSDFEEKTEAFFILFKELL 60 (131)
T ss_dssp GGCSCHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHH
T ss_conf 060369999999999999998
No 10
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=2.99 E-value=1.5e+02 Score=10.51 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=0.0
Q ss_pred EECEEEEEECCCCEEEEEHHH
Q ss_conf 611047552387177760679
Q gi|254780235|r 21 LKKDMYLGWDNNSMFILKQEF 41 (74)
Q Consensus 21 lkkdmylgwdnnsmfilkqef 41 (74)
+|+.+|+-+|+...-|++-++
T Consensus 14 lKkG~~i~~~g~p~~V~~~~~ 34 (71)
T d1bkba1 14 LKEGSYVVIDGEPCRVVEIEK 34 (71)
T ss_dssp CCTTCEEEETTEEEEEEEEEE
T ss_pred CCCCCEEEECCEEEEEEEEEE
T ss_conf 528889999999999988888
Done!