BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780235|ref|YP_003064648.1| hypothetical protein
CLIBASIA_00600 [Candidatus Liberibacter asiaticus str. psy62]
         (74 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|254780235|ref|YP_003064648.1| hypothetical protein CLIBASIA_00600 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254039912|gb|ACT56708.1| hypothetical protein CLIBASIA_00600 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 74

 Score =  145 bits (367), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/74 (100%), Positives = 74/74 (100%)

Query: 1  MFVKEIFLFSFCKAGTVFLSLKKDMYLGWDNNSMFILKQEFFIFMMEKLVCLLLCVCGML 60
          MFVKEIFLFSFCKAGTVFLSLKKDMYLGWDNNSMFILKQEFFIFMMEKLVCLLLCVCGML
Sbjct: 1  MFVKEIFLFSFCKAGTVFLSLKKDMYLGWDNNSMFILKQEFFIFMMEKLVCLLLCVCGML 60

Query: 61 WFSSSGIFAYLNIG 74
          WFSSSGIFAYLNIG
Sbjct: 61 WFSSSGIFAYLNIG 74


>gi|282890843|ref|ZP_06299361.1| hypothetical protein pah_c028o021 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499271|gb|EFB41572.1| hypothetical protein pah_c028o021 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 448

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 7   FLFSFCKAGTVFLSLK---KDMYLGWDNNSMFILKQEFFIFMMEKLVCLLLCVCG 58
           F+ +  K   ++L LK   ++ Y G+D   M+ LK+ F +  +  L+C+LLC+ G
Sbjct: 107 FIGTLIKYAEIYLGLKYRVQNTYGGYDGGPMYFLKKAFAVRWVPMLICVLLCIYG 161


>gi|156548042|ref|XP_001605902.1| PREDICTED: similar to GAPVD1 protein [Nasonia vitripennis]
          Length = 1570

 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%)

Query: 8   LFSFCKAGTVFLSLKKDMYLGWDNNSMFILKQEFFIFMMEKLVCLLLCVCGML 60
           L  F K GTV    K   Y  W  NS+  + Q F + + E + C   C+C ++
Sbjct: 243 LKKFGKEGTVEYQNKLQRYRHWTVNSLVRIAQRFIVSIRENMHCFPTCLCWLV 295


Searching..................................................done


Results from round 2





CONVERGED!
>gi|254780235|ref|YP_003064648.1| hypothetical protein CLIBASIA_00600 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254039912|gb|ACT56708.1| hypothetical protein CLIBASIA_00600 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 74

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 74/74 (100%), Positives = 74/74 (100%)

Query: 1  MFVKEIFLFSFCKAGTVFLSLKKDMYLGWDNNSMFILKQEFFIFMMEKLVCLLLCVCGML 60
          MFVKEIFLFSFCKAGTVFLSLKKDMYLGWDNNSMFILKQEFFIFMMEKLVCLLLCVCGML
Sbjct: 1  MFVKEIFLFSFCKAGTVFLSLKKDMYLGWDNNSMFILKQEFFIFMMEKLVCLLLCVCGML 60

Query: 61 WFSSSGIFAYLNIG 74
          WFSSSGIFAYLNIG
Sbjct: 61 WFSSSGIFAYLNIG 74


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.338    0.148    0.494 

Lambda     K      H
   0.267   0.0479    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,792,445,338
Number of Sequences: 13984884
Number of extensions: 77284546
Number of successful extensions: 282150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 282143
Number of HSP's gapped (non-prelim): 10
length of query: 74
length of database: 4,792,584,752
effective HSP length: 45
effective length of query: 29
effective length of database: 4,163,264,972
effective search space: 120734684188
effective search space used: 120734684188
T: 11
A: 40
X1: 16 ( 7.8 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 76 (33.7 bits)