RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780235|ref|YP_003064648.1| hypothetical protein
CLIBASIA_00600 [Candidatus Liberibacter asiaticus str. psy62]
         (74 letters)



>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition,
          base flipping, bacterial virulence factor,
          transferase/DNA complex; HET: DNA SAH; 1.89A
          {Escherichia coli} PDB: 2ore_D* (A:1-56,A:157-278)
          Length = 178

 Score = 24.4 bits (53), Expect = 5.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 11 FCKAGTVFLSLKKDMYLGWDNNSMFILKQEFFIFM 45
          F  AG+VFL+     Y+  D N+ F   + +   M
Sbjct: 35 FVGAGSVFLNTDFSRYILADINNAFFYCESYADSM 69


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.338    0.148    0.494 

Gapped
Lambda     K      H
   0.267   0.0617    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 553,319
Number of extensions: 19176
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 2
Length of query: 74
Length of database: 4,956,049
Length adjustment: 40
Effective length of query: 34
Effective length of database: 3,603,849
Effective search space: 122530866
Effective search space used: 122530866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 50 (23.3 bits)