HHsearch alignment of GI: 254780236 and MMDB domain: 1gd8_A_
>1gd8_A (A:) 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=0 Score=325.32 Aligned_cols=117 Identities=54% Similarity=0.852 Sum_probs=115.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 99888899999788999999999999998689378759999998864216762311387677889998725668899999
Q gi|254780236|r 1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLF 80 (136)
Q Consensus 1 MrH~~~~rklgr~~~hR~allrnl~~~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf 80 (136)
|||++++++|||+++||++|||||+++||+||+|+||++||||+|+|||+|||+||+|++|++|++.+||.|++++.|||
T Consensus 1 Mrh~~~~~kl~R~~~hR~allrnl~t~Li~herI~TT~~KAke~r~~aEklIt~aK~~~~~~rr~~~~~L~d~~~v~KLf 80 (118)
T 1gd8_A 1 MRHLKSGRKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLF 80 (118)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99988899999880999999999999998579488368999999999999999986386889999872247899999999
Q ss_pred HHHHHHHCCCCCCEEEEEECCC-CCCCCCCEEEEEEEC
Q ss_conf 9999885058775599875378-999887579999526
Q gi|254780236|r 81 GIIAKRYSDRSGGYLRIMKRGF-RYGDSAPMAVIEFVD 117 (136)
Q Consensus 81 ~~l~prf~~R~GGYTRi~kl~~-R~gD~A~ma~iElVd 117 (136)
++|+|||++||||||||+|+|+ |.||+|+||+|||||
T Consensus 81 ~~l~pRy~~R~GGYTRi~kl~~rR~gD~A~maiiElVd 118 (118)
T 1gd8_A 81 DEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVELVE 118 (118)
T ss_dssp HTHHHHTSSCCSCCEEEEEEEEECTTTCCEEEEEEECC
T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEEEEC
T ss_conf 99999973689886888846999999998777998429