HHsearch alignment of GI: 254780236 and MMDB domain: 2cqm_A_

>2cqm_A (A:) Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00  E-value=0  Score=301.33  Aligned_cols=117  Identities=32%  Similarity=0.499  Sum_probs=111.1

Q ss_pred             CHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHH--HHHHHHHCCHHHHHHHHHHHHHHHCCC
Q ss_conf             889999999999999986893787599999988642167623113876778--899987256688999999999885058
Q gi|254780236|r   13 TSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSL--RLAISKIGDVDVVNKLFGIIAKRYSDR   90 (136)
Q Consensus        13 ~~~hR~allrnl~~~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~r--r~~~~~l~~~~~v~kLf~~l~prf~~R   90 (136)
                      +++||++|||||+++||+||+|+||++||||+|+|+|+|||+||+|++|++  +++.+||.|+++++|||++|+|||++|
T Consensus         1 ~~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~r~~~~~~~~l~~~~~v~KLf~~lapRy~~r   80 (122)
T 2cqm_A            1 GSSGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQ   80 (122)
T ss_dssp             CCCCCSSHHHHHHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             96589999999999999739799648999888877888888860486266788876402664889998999880798707


Q ss_pred             CCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCHH
Q ss_conf             775599875378999887579999526886622254025
Q gi|254780236|r   91 SGGYLRIMKRGFRYGDSAPMAVIEFVDRDLSAKGTPVSR  129 (136)
Q Consensus        91 ~GGYTRi~kl~~R~gD~A~ma~iElVd~~~~~~~~~~~~  129 (136)
                      |||||||+|+|+|.||+|+||+|||||+|++++..+.++
T Consensus        81 ~GGYTRI~kl~~R~gD~A~maiiElvd~~~~~~~~~~~~  119 (122)
T 2cqm_A           81 TGGYTRMLQIPNRSLDRAKMAVIEYKGNCLPPLPLPSGP  119 (122)
T ss_dssp             CSCCEEEEEECCCSSSCCCEEEEEESSCCCCCCCCCCSS
T ss_pred             CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf             876689886378888878879999689989988999999