Query gi|254780236|ref|YP_003064649.1| 50S ribosomal protein L17 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 136 No_of_seqs 117 out of 1412 Neff 4.8 Searched_HMMs 23785 Date Tue May 24 01:49:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780236.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2zjr_K 50S ribosomal protein L 100.0 0 0 329.2 12.5 116 1-116 1-116 (116) 2 3bbo_P Ribosomal protein L17; 100.0 0 0 332.8 9.2 116 1-116 90-205 (205) 3 1gd8_A 50S ribosomal protein L 100.0 0 0 328.4 11.6 117 1-117 1-118 (118) 4 3ofq_N 50S ribosomal protein L 100.0 0 0 336.3 2.2 120 1-120 1-120 (120) 5 2cqm_A Ribosomal protein L17 i 100.0 0 0 301.8 7.7 118 13-130 1-120 (122) 6 3kp1_E D-ornithine aminomutase 27.7 10 0.00043 17.5 -0.0 36 46-81 32-73 (121) 7 1o65_A Hypothetical protein YI 22.4 35 0.0015 14.4 1.9 28 88-120 151-179 (246) 8 3h0d_A CTSR; protein DNA compl 16.3 48 0.002 13.6 1.5 38 82-119 44-91 (155) 9 2z99_A Putative uncharacterize 15.7 54 0.0023 13.3 6.0 60 39-100 11-70 (219) 10 3bbo_6 Ribosomal protein L36; 12.9 45 0.0019 13.8 0.6 16 84-99 30-45 (104) No 1 >2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O Probab=100.00 E-value=0 Score=329.21 Aligned_cols=116 Identities=51% Similarity=0.757 Sum_probs=115.5 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH Q ss_conf 99888899999788999999999999998689378759999998864216762311387677889998725668899999 Q gi|254780236|r 1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLF 80 (136) Q Consensus 1 MrH~~~~rklgr~~~hR~allrnl~~~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf 80 (136) |||++++++|||+++||++||+||+++||+||+|+||++||||+|+|+|+|||+||+|++|++|++.+++.|+++++||| T Consensus 1 MrH~~~~rklgr~~~hR~allrnl~~sLi~herI~TT~~KAKe~r~~~EklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf 80 (116) T 2zjr_K 1 MRHGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVM 80 (116) T ss_dssp --CCCCCCCCSSCTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHH T ss_conf 99888889999785999999999999998669899658999999999999987740577777654013365499999999 Q ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEE Q ss_conf 999988505877559987537899988757999952 Q gi|254780236|r 81 GIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFV 116 (136) Q Consensus 81 ~~l~prf~~R~GGYTRi~kl~~R~gD~A~ma~iElV 116 (136) ++|+|||+|||||||||+|+|+|.||+|+||+|||| T Consensus 81 ~~lapry~~R~GGYTRI~kl~~R~gD~A~ma~iElV 116 (116) T 2zjr_K 81 DEVAPKYAERPGGYTRILRVGTRRGDGVTMALIELV 116 (116) T ss_dssp HTHHHHTTTSCSCCCEEEECCCCTTTCCCEEEEEC- T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEC T ss_conf 999798666998848888788999999876888749 No 2 >3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Nicotiana tabacum} SCOP: i.1.1.2 Probab=100.00 E-value=0 Score=332.76 Aligned_cols=116 Identities=40% Similarity=0.662 Sum_probs=115.6 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH Q ss_conf 99888899999788999999999999998689378759999998864216762311387677889998725668899999 Q gi|254780236|r 1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLF 80 (136) Q Consensus 1 MrH~~~~rklgr~~~hR~allrnl~~~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf 80 (136) |||+++++||||+++||++|||||+++||+||+|+||++||||+|+|+|+|||+||+|++|++|++.++|.|+++++||| T Consensus 90 MRH~~~~rKLgR~~shR~ALlRnLvtsLI~heRI~TT~aKAKelr~~aEkLIT~AK~~~l~~rR~~~~~l~dk~~v~KLF 169 (205) T 3bbo_P 90 MRHGRKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALF 169 (205) T ss_dssp CCTTCCSCCTTSCGGGHHHHHHHHHHHHHHTSCEEECHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHTTCCCTTHHHHHT T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHH T ss_conf 11888789899886999999999999999769388478999999999999999741464466999998556689999999 Q ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEE Q ss_conf 999988505877559987537899988757999952 Q gi|254780236|r 81 GIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFV 116 (136) Q Consensus 81 ~~l~prf~~R~GGYTRi~kl~~R~gD~A~ma~iElV 116 (136) ++|+|||+|||||||||+|+|+|.||+|+||+|||| T Consensus 170 ~eiaPRy~~R~GGYTRIiKlg~R~GD~A~mAiIELV 205 (205) T 3bbo_P 170 AEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 205 (205) T ss_dssp TSSGGGGSSCCSCCEECCBCSCCSSSCCCCEEEEEC T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEC T ss_conf 998888577998847778788999999886899859 No 3 >1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ... Probab=100.00 E-value=0 Score=328.39 Aligned_cols=117 Identities=54% Similarity=0.852 Sum_probs=115.8 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH Q ss_conf 99888899999788999999999999998689378759999998864216762311387677889998725668899999 Q gi|254780236|r 1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLF 80 (136) Q Consensus 1 MrH~~~~rklgr~~~hR~allrnl~~~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf 80 (136) |||++++++|||+++||++||+||+++||+||+|+||++||||+|+|+|+|||+||+|++|++|++.++|.|+++++||| T Consensus 1 MrH~~~~rklgr~~~hR~allrnl~~~Li~~erI~TT~~KAKelr~~~EklIt~AK~~~~~~rr~~~~~l~~~~~v~KLf 80 (118) T 1gd8_A 1 MRHLKSGRKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLF 80 (118) T ss_dssp -------------CHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH T ss_conf 99988899999886999999999999998679799558999999899999999873276777778887625648999999 Q ss_pred HHHHHHHCCCCCCEEEEEECCC-CCCCCCCEEEEEEEC Q ss_conf 9999885058775599875378-999887579999526 Q gi|254780236|r 81 GIIAKRYSDRSGGYLRIMKRGF-RYGDSAPMAVIEFVD 117 (136) Q Consensus 81 ~~l~prf~~R~GGYTRi~kl~~-R~gD~A~ma~iElVd 117 (136) ++|+|||++||||||||+|+|+ |.||+|+||+||||| T Consensus 81 ~~lapry~~R~GGYTRI~kl~~~R~gD~A~ma~iElVd 118 (118) T 1gd8_A 81 DEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVELVE 118 (118) T ss_dssp HTHHHHTSSCCSCCEEEEEEEEECTTTCCEEEEEEECC T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEEEEC T ss_conf 97628857699885898865899999998888998439 No 4 >3ofq_N 50S ribosomal protein L17; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_N 2wwq_N 3ofr_N* 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N 2i2v_N 2j28_N 2i2t_N* 2qao_N* 2qba_N* 2qbc_N* 2qbe_N 2qbg_N 2qbi_N* ... Probab=100.00 E-value=0 Score=336.32 Aligned_cols=120 Identities=58% Similarity=0.876 Sum_probs=118.7 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH Q ss_conf 99888899999788999999999999998689378759999998864216762311387677889998725668899999 Q gi|254780236|r 1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLF 80 (136) Q Consensus 1 MrH~~~~rklgr~~~hR~allrnl~~~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf 80 (136) |||+++++||||+++||++||+||+++||+||+|+||++||||+|+++|+|||+||+|+++++|++.+++.|++++.||| T Consensus 1 MrH~~~~rkLgr~~~hR~allrnl~t~Li~~erI~TT~~KAKe~r~~~EklIt~aK~~~~~~rr~~~~~l~~~~~v~kLf 80 (120) T 3ofq_N 1 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLF 80 (120) T ss_dssp CCTTCCSCCTTSCSTTTTTSTTTSSTTTTTTSEEEEEHHHHHHHHHHHSHHHHSTTSCSSSTTTHHHHTTCCHHHHHTTT T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHH T ss_conf 99988889999985999999999999999769767759999999999999988714576788999884515889999999 Q ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCC Q ss_conf 9999885058775599875378999887579999526886 Q gi|254780236|r 81 GIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDL 120 (136) Q Consensus 81 ~~l~prf~~R~GGYTRi~kl~~R~gD~A~ma~iElVd~~~ 120 (136) ++|+|||++||||||||+|+|+|.||+|+||+|||||+|. T Consensus 81 ~~iapry~~R~GGYTRI~klg~R~gD~A~maiiElVd~~e 120 (120) T 3ofq_N 81 NELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSE 120 (120) T ss_dssp TTHHHHTTSCCSCCEECCCCCCCSSSCCCEEEEEETTCCC T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCC T ss_conf 9998885779988478887789999898788999732899 No 5 >2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S Probab=100.00 E-value=0 Score=301.77 Aligned_cols=118 Identities=32% Similarity=0.495 Sum_probs=112.2 Q ss_pred CHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHH--HHHHHHHCCHHHHHHHHHHHHHHHCCC Q ss_conf 889999999999999986893787599999988642167623113876778--899987256688999999999885058 Q gi|254780236|r 13 TSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSL--RLAISKIGDVDVVNKLFGIIAKRYSDR 90 (136) Q Consensus 13 ~~~hR~allrnl~~~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~r--r~~~~~l~~~~~v~kLf~~l~prf~~R 90 (136) .||||+||||||+++||+||+|+||++||||+|+|+|+|||+||+|++|++ +++.+||.|+++++|||++|+|||++| T Consensus 1 gsshR~allrnl~tsLi~herI~TT~~KAKelr~~~EkLIt~aK~g~~~~r~~r~~~~~l~~~~~v~KLf~~lapRy~~R 80 (122) T 2cqm_A 1 GSSGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQ 80 (122) T ss_dssp CCCCCSSHHHHHHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHHS T ss_pred CCHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCHHHCCC T ss_conf 96589999999999999759799778999999999999999985476341999999875265889999999756464378 Q ss_pred CCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCHHH Q ss_conf 7755998753789998875799995268866222540256 Q gi|254780236|r 91 SGGYLRIMKRGFRYGDSAPMAVIEFVDRDLSAKGTPVSRK 130 (136) Q Consensus 91 ~GGYTRi~kl~~R~gD~A~ma~iElVd~~~~~~~~~~~~~ 130 (136) |||||||+|+|+|.||+|+||+|||||+|+++.+.|.+.. T Consensus 81 ~GGYTRI~k~~~R~gD~A~ma~iElv~~~~pp~~~~~~~~ 120 (122) T 2cqm_A 81 TGGYTRMLQIPNRSLDRAKMAVIEYKGNCLPPLPLPSGPS 120 (122) T ss_dssp CSCCEEEEEECCCSSSCCCEEEEEESSCCCCCCCCCCSSC T ss_pred CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCC T ss_conf 9875888865799998888899996899899889999999 No 6 >3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E* Probab=27.66 E-value=10 Score=17.54 Aligned_cols=36 Identities=31% Similarity=0.488 Sum_probs=21.3 Q ss_pred HHHHHHHHHHCCCCHHHHH------HHHHHHCCHHHHHHHHH Q ss_conf 6421676231138767788------99987256688999999 Q gi|254780236|r 46 PIVEKLVTLGKKGGLHSLR------LAISKIGDVDVVNKLFG 81 (136) Q Consensus 46 ~~aEklIt~AK~~~~~~rr------~~~~~l~~~~~v~kLf~ 81 (136) ..+|+||.+|+..+..|.. +-++-|..+.+|.++|+ T Consensus 32 kiVdPliela~~hTsPSIERSVLLRMGF~Sleak~iVe~v~~ 73 (121) T 3kp1_E 32 KIVDPLLDLGKKNTTPSIERSVLLRMGFSSLEAKAIVDKTMD 73 (121) T ss_dssp HHHHHHHHHHHHEECHHHHHHHHHHTTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHH T ss_conf 987599999761488138999999924117779999999998 No 7 >1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A Probab=22.41 E-value=35 Score=14.44 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=21.8 Q ss_pred CCCCCCEEEEEECC-CCCCCCCCEEEEEEECCCC Q ss_conf 05877559987537-8999887579999526886 Q gi|254780236|r 88 SDRSGGYLRIMKRG-FRYGDSAPMAVIEFVDRDL 120 (136) Q Consensus 88 ~~R~GGYTRi~kl~-~R~gD~A~ma~iElVd~~~ 120 (136) ..+.|-|.||++-| .+.|| -|++++++. T Consensus 151 ~G~~G~Y~RVL~~G~I~~GD-----~v~l~~rp~ 179 (246) T 1o65_A 151 TGKVGWLYSVIAPGKVSADA-----PLELVSRVS 179 (246) T ss_dssp HTCCCEEEEEEECEEEETTS-----CEEEEECCC T ss_pred CCCCEEEEEEECCCEECCCC-----EEEEEECCC T ss_conf 58845899995586773899-----789972799 No 8 >3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus} Probab=16.35 E-value=48 Score=13.60 Aligned_cols=38 Identities=29% Similarity=0.530 Sum_probs=21.2 Q ss_pred HHHHHHCCCC----------CCEEEEEECCCCCCCCCCEEEEEEECCC Q ss_conf 9998850587----------7559987537899988757999952688 Q gi|254780236|r 82 IIAKRYSDRS----------GGYLRIMKRGFRYGDSAPMAVIEFVDRD 119 (136) Q Consensus 82 ~l~prf~~R~----------GGYTRi~kl~~R~gD~A~ma~iElVd~~ 119 (136) +|.-||..-+ |||-||.|+.....+.--..+++.|+.. T Consensus 44 Vl~TRFT~e~GY~VESkRGGGGyIRI~kv~~~~~~~~~~~l~~~ig~~ 91 (155) T 3h0d_A 44 VINTRFTLERGYIVESKRGGGGYIRIMKVKTKSEAQLIDQLLELIDHR 91 (155) T ss_dssp HHHHHSSGGGTEEEEEECSTTCEEEEEEEEECTTHHHHHHHHTTCCSC T ss_pred EECCCCCCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHCCC T ss_conf 654664698884898642898559999956778088999999986574 No 9 >2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis} Probab=15.70 E-value=54 Score=13.28 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=41.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEEC Q ss_conf 99999886421676231138767788999872566889999999998850587755998753 Q gi|254780236|r 39 PKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKR 100 (136) Q Consensus 39 ~KAKelr~~aEklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf~~l~prf~~R~GGYTRi~kl 100 (136) ....+++..+|=|+..+-. .+....++...=.+...+..++.++...|.+++.||. |+.. T Consensus 11 ~~~~el~~iIEAlLF~s~e-pvs~~~La~~~~~~~~~v~~~l~~L~~~y~~~~~g~~-l~~~ 70 (219) T 2z99_A 11 LDADELKRVLEALLLVIDT-PVTADALAAATEQPVYRVAAKLQLMADELTGRDSGID-LRHT 70 (219) T ss_dssp CCHHHHHHHHHHHHHHCSS-CBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEE-EEEE T ss_pred CCHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEE-EEEE T ss_conf 9999999999999997179-9799999988389889999999999998742666358-9996 No 10 >3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} SCOP: i.1.1.1 Probab=12.91 E-value=45 Score=13.76 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=11.7 Q ss_pred HHHHCCCCCCEEEEEE Q ss_conf 9885058775599875 Q gi|254780236|r 84 AKRYSDRSGGYLRIMK 99 (136) Q Consensus 84 ~prf~~R~GGYTRi~k 99 (136) -||++.|+|||+-.-- T Consensus 30 nPRHKQRQG~~~~~a~ 45 (104) T 3bbo_6 30 NPKHKQRQGGFSSFAY 45 (104) T ss_dssp CGGGCBCCC------- T ss_pred CCCHHHHCCCCCCEEC T ss_conf 9745432478520010 Done!