Query         gi|254780236|ref|YP_003064649.1| 50S ribosomal protein L17 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 136
No_of_seqs    117 out of 1412
Neff          4.8 
Searched_HMMs 23785
Date          Tue May 24 01:49:41 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780236.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2zjr_K 50S ribosomal protein L 100.0       0       0  329.2  12.5  116    1-116     1-116 (116)
  2 3bbo_P Ribosomal protein L17;  100.0       0       0  332.8   9.2  116    1-116    90-205 (205)
  3 1gd8_A 50S ribosomal protein L 100.0       0       0  328.4  11.6  117    1-117     1-118 (118)
  4 3ofq_N 50S ribosomal protein L 100.0       0       0  336.3   2.2  120    1-120     1-120 (120)
  5 2cqm_A Ribosomal protein L17 i 100.0       0       0  301.8   7.7  118   13-130     1-120 (122)
  6 3kp1_E D-ornithine aminomutase  27.7      10 0.00043   17.5  -0.0   36   46-81     32-73  (121)
  7 1o65_A Hypothetical protein YI  22.4      35  0.0015   14.4   1.9   28   88-120   151-179 (246)
  8 3h0d_A CTSR; protein DNA compl  16.3      48   0.002   13.6   1.5   38   82-119    44-91  (155)
  9 2z99_A Putative uncharacterize  15.7      54  0.0023   13.3   6.0   60   39-100    11-70  (219)
 10 3bbo_6 Ribosomal protein L36;   12.9      45  0.0019   13.8   0.6   16   84-99     30-45  (104)

No 1  
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O
Probab=100.00  E-value=0  Score=329.21  Aligned_cols=116  Identities=51%  Similarity=0.757  Sum_probs=115.5

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             99888899999788999999999999998689378759999998864216762311387677889998725668899999
Q gi|254780236|r    1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLF   80 (136)
Q Consensus         1 MrH~~~~rklgr~~~hR~allrnl~~~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf   80 (136)
                      |||++++++|||+++||++||+||+++||+||+|+||++||||+|+|+|+|||+||+|++|++|++.+++.|+++++|||
T Consensus         1 MrH~~~~rklgr~~~hR~allrnl~~sLi~herI~TT~~KAKe~r~~~EklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf   80 (116)
T 2zjr_K            1 MRHGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVM   80 (116)
T ss_dssp             --CCCCCCCCSSCTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHH
T ss_conf             99888889999785999999999999998669899658999999999999987740577777654013365499999999


Q ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEE
Q ss_conf             999988505877559987537899988757999952
Q gi|254780236|r   81 GIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFV  116 (136)
Q Consensus        81 ~~l~prf~~R~GGYTRi~kl~~R~gD~A~ma~iElV  116 (136)
                      ++|+|||+|||||||||+|+|+|.||+|+||+||||
T Consensus        81 ~~lapry~~R~GGYTRI~kl~~R~gD~A~ma~iElV  116 (116)
T 2zjr_K           81 DEVAPKYAERPGGYTRILRVGTRRGDGVTMALIELV  116 (116)
T ss_dssp             HTHHHHTTTSCSCCCEEEECCCCTTTCCCEEEEEC-
T ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEC
T ss_conf             999798666998848888788999999876888749


No 2  
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Nicotiana tabacum} SCOP: i.1.1.2
Probab=100.00  E-value=0  Score=332.76  Aligned_cols=116  Identities=40%  Similarity=0.662  Sum_probs=115.6

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             99888899999788999999999999998689378759999998864216762311387677889998725668899999
Q gi|254780236|r    1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLF   80 (136)
Q Consensus         1 MrH~~~~rklgr~~~hR~allrnl~~~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf   80 (136)
                      |||+++++||||+++||++|||||+++||+||+|+||++||||+|+|+|+|||+||+|++|++|++.++|.|+++++|||
T Consensus        90 MRH~~~~rKLgR~~shR~ALlRnLvtsLI~heRI~TT~aKAKelr~~aEkLIT~AK~~~l~~rR~~~~~l~dk~~v~KLF  169 (205)
T 3bbo_P           90 MRHGRKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALF  169 (205)
T ss_dssp             CCTTCCSCCTTSCGGGHHHHHHHHHHHHHHTSCEEECHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHTTCCCTTHHHHHT
T ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf             11888789899886999999999999999769388478999999999999999741464466999998556689999999


Q ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEE
Q ss_conf             999988505877559987537899988757999952
Q gi|254780236|r   81 GIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFV  116 (136)
Q Consensus        81 ~~l~prf~~R~GGYTRi~kl~~R~gD~A~ma~iElV  116 (136)
                      ++|+|||+|||||||||+|+|+|.||+|+||+||||
T Consensus       170 ~eiaPRy~~R~GGYTRIiKlg~R~GD~A~mAiIELV  205 (205)
T 3bbo_P          170 AEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV  205 (205)
T ss_dssp             TSSGGGGSSCCSCCEECCBCSCCSSSCCCCEEEEEC
T ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEC
T ss_conf             998888577998847778788999999886899859


No 3  
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...
Probab=100.00  E-value=0  Score=328.39  Aligned_cols=117  Identities=54%  Similarity=0.852  Sum_probs=115.8

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             99888899999788999999999999998689378759999998864216762311387677889998725668899999
Q gi|254780236|r    1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLF   80 (136)
Q Consensus         1 MrH~~~~rklgr~~~hR~allrnl~~~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf   80 (136)
                      |||++++++|||+++||++||+||+++||+||+|+||++||||+|+|+|+|||+||+|++|++|++.++|.|+++++|||
T Consensus         1 MrH~~~~rklgr~~~hR~allrnl~~~Li~~erI~TT~~KAKelr~~~EklIt~AK~~~~~~rr~~~~~l~~~~~v~KLf   80 (118)
T 1gd8_A            1 MRHLKSGRKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLF   80 (118)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99988899999886999999999999998679799558999999899999999873276777778887625648999999


Q ss_pred             HHHHHHHCCCCCCEEEEEECCC-CCCCCCCEEEEEEEC
Q ss_conf             9999885058775599875378-999887579999526
Q gi|254780236|r   81 GIIAKRYSDRSGGYLRIMKRGF-RYGDSAPMAVIEFVD  117 (136)
Q Consensus        81 ~~l~prf~~R~GGYTRi~kl~~-R~gD~A~ma~iElVd  117 (136)
                      ++|+|||++||||||||+|+|+ |.||+|+||+|||||
T Consensus        81 ~~lapry~~R~GGYTRI~kl~~~R~gD~A~ma~iElVd  118 (118)
T 1gd8_A           81 DEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVELVE  118 (118)
T ss_dssp             HTHHHHTSSCCSCCEEEEEEEEECTTTCCEEEEEEECC
T ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEEEEC
T ss_conf             97628857699885898865899999998888998439


No 4  
>3ofq_N 50S ribosomal protein L17; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_N 2wwq_N 3ofr_N* 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N 2i2v_N 2j28_N 2i2t_N* 2qao_N* 2qba_N* 2qbc_N* 2qbe_N 2qbg_N 2qbi_N* ...
Probab=100.00  E-value=0  Score=336.32  Aligned_cols=120  Identities=58%  Similarity=0.876  Sum_probs=118.7

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             99888899999788999999999999998689378759999998864216762311387677889998725668899999
Q gi|254780236|r    1 MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLF   80 (136)
Q Consensus         1 MrH~~~~rklgr~~~hR~allrnl~~~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf   80 (136)
                      |||+++++||||+++||++||+||+++||+||+|+||++||||+|+++|+|||+||+|+++++|++.+++.|++++.|||
T Consensus         1 MrH~~~~rkLgr~~~hR~allrnl~t~Li~~erI~TT~~KAKe~r~~~EklIt~aK~~~~~~rr~~~~~l~~~~~v~kLf   80 (120)
T 3ofq_N            1 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLF   80 (120)
T ss_dssp             CCTTCCSCCTTSCSTTTTTSTTTSSTTTTTTSEEEEEHHHHHHHHHHHSHHHHSTTSCSSSTTTHHHHTTCCHHHHHTTT
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99988889999985999999999999999769767759999999999999988714576788999884515889999999


Q ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCC
Q ss_conf             9999885058775599875378999887579999526886
Q gi|254780236|r   81 GIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDL  120 (136)
Q Consensus        81 ~~l~prf~~R~GGYTRi~kl~~R~gD~A~ma~iElVd~~~  120 (136)
                      ++|+|||++||||||||+|+|+|.||+|+||+|||||+|.
T Consensus        81 ~~iapry~~R~GGYTRI~klg~R~gD~A~maiiElVd~~e  120 (120)
T 3ofq_N           81 NELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSE  120 (120)
T ss_dssp             TTHHHHTTSCCSCCEECCCCCCCSSSCCCEEEEEETTCCC
T ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCC
T ss_conf             9998885779988478887789999898788999732899


No 5  
>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S
Probab=100.00  E-value=0  Score=301.77  Aligned_cols=118  Identities=32%  Similarity=0.495  Sum_probs=112.2

Q ss_pred             CHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCCHHHH--HHHHHHHCCHHHHHHHHHHHHHHHCCC
Q ss_conf             889999999999999986893787599999988642167623113876778--899987256688999999999885058
Q gi|254780236|r   13 TSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSL--RLAISKIGDVDVVNKLFGIIAKRYSDR   90 (136)
Q Consensus        13 ~~~hR~allrnl~~~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~r--r~~~~~l~~~~~v~kLf~~l~prf~~R   90 (136)
                      .||||+||||||+++||+||+|+||++||||+|+|+|+|||+||+|++|++  +++.+||.|+++++|||++|+|||++|
T Consensus         1 gsshR~allrnl~tsLi~herI~TT~~KAKelr~~~EkLIt~aK~g~~~~r~~r~~~~~l~~~~~v~KLf~~lapRy~~R   80 (122)
T 2cqm_A            1 GSSGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQ   80 (122)
T ss_dssp             CCCCCSSHHHHHHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCHHHCCC
T ss_conf             96589999999999999759799778999999999999999985476341999999875265889999999756464378


Q ss_pred             CCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCHHH
Q ss_conf             7755998753789998875799995268866222540256
Q gi|254780236|r   91 SGGYLRIMKRGFRYGDSAPMAVIEFVDRDLSAKGTPVSRK  130 (136)
Q Consensus        91 ~GGYTRi~kl~~R~gD~A~ma~iElVd~~~~~~~~~~~~~  130 (136)
                      |||||||+|+|+|.||+|+||+|||||+|+++.+.|.+..
T Consensus        81 ~GGYTRI~k~~~R~gD~A~ma~iElv~~~~pp~~~~~~~~  120 (122)
T 2cqm_A           81 TGGYTRMLQIPNRSLDRAKMAVIEYKGNCLPPLPLPSGPS  120 (122)
T ss_dssp             CSCCEEEEEECCCSSSCCCEEEEEESSCCCCCCCCCCSSC
T ss_pred             CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf             9875888865799998888899996899899889999999


No 6  
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=27.66  E-value=10  Score=17.54  Aligned_cols=36  Identities=31%  Similarity=0.488  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHCCCCHHHHH------HHHHHHCCHHHHHHHHH
Q ss_conf             6421676231138767788------99987256688999999
Q gi|254780236|r   46 PIVEKLVTLGKKGGLHSLR------LAISKIGDVDVVNKLFG   81 (136)
Q Consensus        46 ~~aEklIt~AK~~~~~~rr------~~~~~l~~~~~v~kLf~   81 (136)
                      ..+|+||.+|+..+..|..      +-++-|..+.+|.++|+
T Consensus        32 kiVdPliela~~hTsPSIERSVLLRMGF~Sleak~iVe~v~~   73 (121)
T 3kp1_E           32 KIVDPLLDLGKKNTTPSIERSVLLRMGFSSLEAKAIVDKTMD   73 (121)
T ss_dssp             HHHHHHHHHHHHEECHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf             987599999761488138999999924117779999999998


No 7  
>1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A
Probab=22.41  E-value=35  Score=14.44  Aligned_cols=28  Identities=18%  Similarity=0.291  Sum_probs=21.8

Q ss_pred             CCCCCCEEEEEECC-CCCCCCCCEEEEEEECCCC
Q ss_conf             05877559987537-8999887579999526886
Q gi|254780236|r   88 SDRSGGYLRIMKRG-FRYGDSAPMAVIEFVDRDL  120 (136)
Q Consensus        88 ~~R~GGYTRi~kl~-~R~gD~A~ma~iElVd~~~  120 (136)
                      ..+.|-|.||++-| .+.||     -|++++++.
T Consensus       151 ~G~~G~Y~RVL~~G~I~~GD-----~v~l~~rp~  179 (246)
T 1o65_A          151 TGKVGWLYSVIAPGKVSADA-----PLELVSRVS  179 (246)
T ss_dssp             HTCCCEEEEEEECEEEETTS-----CEEEEECCC
T ss_pred             CCCCEEEEEEECCCEECCCC-----EEEEEECCC
T ss_conf             58845899995586773899-----789972799


No 8  
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=16.35  E-value=48  Score=13.60  Aligned_cols=38  Identities=29%  Similarity=0.530  Sum_probs=21.2

Q ss_pred             HHHHHHCCCC----------CCEEEEEECCCCCCCCCCEEEEEEECCC
Q ss_conf             9998850587----------7559987537899988757999952688
Q gi|254780236|r   82 IIAKRYSDRS----------GGYLRIMKRGFRYGDSAPMAVIEFVDRD  119 (136)
Q Consensus        82 ~l~prf~~R~----------GGYTRi~kl~~R~gD~A~ma~iElVd~~  119 (136)
                      +|.-||..-+          |||-||.|+.....+.--..+++.|+..
T Consensus        44 Vl~TRFT~e~GY~VESkRGGGGyIRI~kv~~~~~~~~~~~l~~~ig~~   91 (155)
T 3h0d_A           44 VINTRFTLERGYIVESKRGGGGYIRIMKVKTKSEAQLIDQLLELIDHR   91 (155)
T ss_dssp             HHHHHSSGGGTEEEEEECSTTCEEEEEEEEECTTHHHHHHHHTTCCSC
T ss_pred             EECCCCCCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf             654664698884898642898559999956778088999999986574


No 9  
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=15.70  E-value=54  Score=13.28  Aligned_cols=60  Identities=20%  Similarity=0.220  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf             99999886421676231138767788999872566889999999998850587755998753
Q gi|254780236|r   39 PKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKR  100 (136)
Q Consensus        39 ~KAKelr~~aEklIt~AK~~~~~~rr~~~~~l~~~~~v~kLf~~l~prf~~R~GGYTRi~kl  100 (136)
                      ....+++..+|=|+..+-. .+....++...=.+...+..++.++...|.+++.||. |+..
T Consensus        11 ~~~~el~~iIEAlLF~s~e-pvs~~~La~~~~~~~~~v~~~l~~L~~~y~~~~~g~~-l~~~   70 (219)
T 2z99_A           11 LDADELKRVLEALLLVIDT-PVTADALAAATEQPVYRVAAKLQLMADELTGRDSGID-LRHT   70 (219)
T ss_dssp             CCHHHHHHHHHHHHHHCSS-CBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEE-EEEE
T ss_pred             CCHHHHHHHHHHHHHHCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEE-EEEE
T ss_conf             9999999999999997179-9799999988389889999999999998742666358-9996


No 10 
>3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} SCOP: i.1.1.1
Probab=12.91  E-value=45  Score=13.76  Aligned_cols=16  Identities=19%  Similarity=0.412  Sum_probs=11.7

Q ss_pred             HHHHCCCCCCEEEEEE
Q ss_conf             9885058775599875
Q gi|254780236|r   84 AKRYSDRSGGYLRIMK   99 (136)
Q Consensus        84 ~prf~~R~GGYTRi~k   99 (136)
                      -||++.|+|||+-.--
T Consensus        30 nPRHKQRQG~~~~~a~   45 (104)
T 3bbo_6           30 NPKHKQRQGGFSSFAY   45 (104)
T ss_dssp             CGGGCBCCC-------
T ss_pred             CCCHHHHCCCCCCEEC
T ss_conf             9745432478520010


Done!