RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780236|ref|YP_003064649.1| 50S ribosomal protein L17
[Candidatus Liberibacter asiaticus str. psy62]
         (136 letters)



>3i1n_N 50S ribosomal protein L17; ribosome structure, protein-RNA
           complex, acetylation, ribonucleoprotein, ribosomal
           protein, RNA-binding, rRNA- binding, methylation; 3.19A
           {Escherichia coli k-12} PDB: 1p85_L 1p86_L 1vs8_N 2aw4_N
           2awb_N 1vs6_N 2i2v_N 2j28_N 2i2t_N* 2qao_N* 2qba_N*
           2qbc_N* 2qbe_N 2qbg_N 2qbi_N* 2qbk_N* 2qov_N 2qox_N
           2qoz_N* 2qp1_N* ... (N:)
          Length = 127

 Score =  162 bits (412), Expect = 1e-41
 Identities = 70/125 (56%), Positives = 89/125 (71%)

Query: 1   MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60
           MRH  SGR+LNR SSHR+AMF NMA S++ HE I TTLPKAKELR +VE L+TL K   +
Sbjct: 1   MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSV 60

Query: 61  HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDL 120
            + RLA ++  D ++V KLF  +  R++ R+GGY RI+K GFR GD+APMA IE VDR  
Sbjct: 61  ANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSE 120

Query: 121 SAKGT 125
            A+  
Sbjct: 121 KAEAA 125


>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach
           chloroplast ribosome, ribonucleoprotein particle,
           macromolecular complex; 9.40A {Nicotiana tabacum} (P:)
          Length = 205

 Score =  157 bits (398), Expect = 6e-40
 Identities = 46/116 (39%), Positives = 69/116 (59%)

Query: 1   MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60
           MRH     KLNR    R+A+   +   ++ H +I TT  +A+ +R  V+K++T+ K G L
Sbjct: 90  MRHGRKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSL 149

Query: 61  HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFV 116
           H  R A+  I +  +V+ LF  +  RY +R+GGY RI++   R GD+APMA IE V
Sbjct: 150 HKRRQALGFIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 205


>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal
           subunit, ribonucleoprotein, RNA-binding, rRNA-binding,
           tRNA-binding, methylation; 2.91A {Deinococcus
           radiodurans} (K:)
          Length = 116

 Score =  148 bits (375), Expect = 3e-37
 Identities = 59/116 (50%), Positives = 75/116 (64%)

Query: 1   MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60
           MRH  +GRKLNR SS R A+    A +++   +I TTL KAKELRP VE+L+T  K G L
Sbjct: 1   MRHGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDL 60

Query: 61  HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFV 116
           HS RL    I D DVV K+   +A +Y++R GGY RI++ G R GD   MA+IE V
Sbjct: 61  HSRRLVAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIELV 116


>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein
           S8-like domain, Trp repressor-like domain,
           helix-turn-helix motif; 2.30A {Thermus thermophilus}
           (A:)
          Length = 118

 Score =  148 bits (374), Expect = 4e-37
 Identities = 63/118 (53%), Positives = 82/118 (69%), Gaps = 1/118 (0%)

Query: 1   MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60
           MRH  SGRKLNR SSHR A++ N A S++ H +I TT+PKAKELR  V+ L+ L K+G L
Sbjct: 1   MRHLKSGRKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDL 60

Query: 61  HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRG-FRYGDSAPMAVIEFVD 117
           H+ RL +  + DV +V KLF  IA RY DR GGY R++K    R GD AP+A++E V+
Sbjct: 61  HARRLVLRDLQDVKLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVELVE 118


>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B),
           structural genomics, NPPSFA, national project on protein
           structural and functional analyses; NMR {Homo sapiens}
           (A:)
          Length = 122

 Score =  144 bits (364), Expect = 5e-36
 Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 14  SSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHS--LRLAISKIG 71
           SS    +  N+   ++ HE+I     +  E+R   EKL+  GK G  +   +R+A   + 
Sbjct: 2   SSGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLT 61

Query: 72  DVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDLSAKGTPVSRKS 131
           + D++ KLF ++A RY D++GGY R+++   R  D A MAVIE+    L     P    S
Sbjct: 62  EKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIEYKGNCLPPLPLPSGPSS 121


>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier
           protein desaturase; electron transfer, four-helix
           bundle, oxidoreductase; HET: GVM; 1.95A {Hedera helix}
           PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 1afr_A 2j2f_A
           (A:156-321)
          Length = 166

 Score = 27.8 bits (62), Expect = 0.48
 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 64  RLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGF-RYGDSAPMAVIEFVDRDLSA 122
           +LA    GD   +  + G IA      +  Y +I+++      D+  +A  + + + ++ 
Sbjct: 28  KLA-QHYGD-KKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKITM 85

Query: 123 KGTPVSRKSHK 133
               +   S +
Sbjct: 86  PAHLMYDGSDE 96


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.321    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 991,296
Number of extensions: 40645
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 8
Length of query: 136
Length of database: 4,956,049
Length adjustment: 80
Effective length of query: 56
Effective length of database: 2,251,649
Effective search space: 126092344
Effective search space used: 126092344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)