RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780236|ref|YP_003064649.1| 50S ribosomal protein L17
[Candidatus Liberibacter asiaticus str. psy62]
         (136 letters)



>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17
           {Escherichia coli [TaxId: 562]}
          Length = 120

 Score =  160 bits (406), Expect = 4e-41
 Identities = 69/119 (57%), Positives = 87/119 (73%)

Query: 1   MRHAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGL 60
           MRH  SGR+LNR SSHR+AMF NMA S++ HE I TTLPKAKELR +VE L+TL K   +
Sbjct: 1   MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSV 60

Query: 61  HSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRD 119
            + RLA ++  D ++V KLF  +  R++ R+GGY RI+K GFR GD+APMA IE VDR 
Sbjct: 61  ANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRS 119


>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 113

 Score =  141 bits (356), Expect = 3e-35
 Identities = 56/112 (50%), Positives = 72/112 (64%)

Query: 3   HAISGRKLNRTSSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHS 62
           H  +GRKLNR SS R A+    A +++   +I TTL KAKELRP VE+L+T  K G LHS
Sbjct: 1   HGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHS 60

Query: 63  LRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIE 114
            RL    I D DVV K+   +A +Y++R GGY RI++ G R GD   MA+IE
Sbjct: 61  RRLVAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIE 112


>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus
           thermophilus [TaxId: 274]}
          Length = 105

 Score =  125 bits (316), Expect = 1e-30
 Identities = 53/105 (50%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 14  SSHRKAMFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHSLRLAISKIGDV 73
           SSHR A++ N A S++ H +I TT+PKAKELR  V+ L+ L K+G LH+ RL +  + DV
Sbjct: 1   SSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDV 60

Query: 74  DVVNKLFGIIAKRYSDRSGGYLRIMKRG-FRYGDSAPMAVIEFVD 117
            +V KLF  IA RY DR GGY R++K    R GD AP+A++E V+
Sbjct: 61  KLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVELVE 105


>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 109

 Score =  121 bits (304), Expect = 2e-29
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 2/109 (1%)

Query: 20  MFSNMAASIIWHEQIVTTLPKAKELRPIVEKLVTLGKKGGLHS--LRLAISKIGDVDVVN 77
           +  N+   ++ HE+I     +  E+R   EKL+  GK G  +   +R+A   + + D++ 
Sbjct: 1   LLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIP 60

Query: 78  KLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMAVIEFVDRDLSAKGTP 126
           KLF ++A RY D++GGY R+++   R  D A MAVIE+    L     P
Sbjct: 61  KLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIEYKGNCLPPLPLP 109


>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein]
           desaturase {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 267

 Score = 25.2 bits (55), Expect = 2.3
 Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 52  VTLGKKGGLHSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGGYLRIMKRGFRYGDSAPMA 111
           +   ++ G    R   ++I +  ++  L   IA+        +  ++     Y     +A
Sbjct: 148 MAFYERCGAVFCRNLAAQIEE-PILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIA 206

Query: 112 VIEFVDRDLSAKGTPV 127
            I     DL   G  +
Sbjct: 207 AIAARAADLDVLGADI 222


>d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha)
          {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
          Length = 276

 Score = 25.1 bits (54), Expect = 2.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 59 GLHSLRLAISKIGDVDVV 76
          GL  L      +GDVDVV
Sbjct: 15 GLRLLYQFALSLGDVDVV 32


>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta
           {Acidaminococcus fermentans [TaxId: 905]}
          Length = 260

 Score = 23.4 bits (50), Expect = 7.3
 Identities = 4/30 (13%), Positives = 11/30 (36%)

Query: 22  SNMAASIIWHEQIVTTLPKAKELRPIVEKL 51
            N    +   + +    P    ++ I E++
Sbjct: 221 ENTGFDLDVSKAVELEAPDPAVIKLIREEI 250


>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima
          [TaxId: 2336]}
          Length = 247

 Score = 23.2 bits (49), Expect = 7.7
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 59 GLHSLRLAISKIGDVDVV 76
          G+  L   +S+  +V VV
Sbjct: 15 GIIVLAELLSEEHEVFVV 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 487,081
Number of extensions: 21022
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 12
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)