HHsearch alignment for GI: 254780237 and conserved domain: PRK03773
>PRK03773 DNA-directed RNA polymerase subunit L; Provisional.
Probab=95.98 E-value=0.021 Score=35.85 Aligned_cols=51 Identities=25% Similarity=0.306 Sum_probs=39.2
Q ss_pred EEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 4422357764116887762189999993896177799999999999988876224
Q gi|254780237|r 180 IKKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFINF 234 (340)
Q Consensus 180 V~~Vny~Ve~~rvg~~t~~dkL~lEI~TnGsi~P~eAl~~Aa~iL~~~l~~f~~~ 234 (340)
T Consensus 38 V~fAgY~ipHPl~~~----~~p~~rIqTdg~~~P~~aL~~A~~~li~~c~~~~e~ 88 (95)
T PRK03773 38 VKFAAYTIEHPITMA----RKPRFRVVTDGKITPEKALEEAAQKIFDRAKEVLEA 88 (95)
T ss_pred EEEEEECCCCCCCCC----CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 599985389976556----864899983899898999999999999999999999