HHsearch alignment of GI: 254780237 and MMDB domain: 1bdf_A_51-178
>1bdf_A (A:51-178) RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli}
Probab=100.00 E-value=8.4e-43 Score=296.98 Aligned_cols=124 Identities=44% Similarity=0.799 Sum_probs=119.4
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCEEEEEEEECCEEEEEEEEECCCCEEEECCCEEE
Q ss_conf 98306889998871443146646244499999840114177727982799999944716996335138985998888089
Q gi|254780237|r 55 LRGAAITAVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMSGDSHKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDHVI 134 (340)
Q Consensus 55 i~G~ait~vkI~gv~HEfs~i~GV~EDV~eIiLNLK~I~~k~~~~~~~~~~l~~~Gp~~vtA~Di~~p~~veivNpd~~I 134 (340)
++|+|||+|||+|+.|||++||||+|||++|+||||+|+|++++++++.+++.++||++|||+||++|+++||+||||||
T Consensus 1 i~G~aI~~vkI~Gv~HEfs~i~GV~EDv~eIilNLK~i~~~~~~~~~~~~~l~~~gp~~VtA~di~~p~~veIvnpd~~I 80 (128)
T 1bdf_A 1 MPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVI 80 (128)
T ss_dssp CCCEEEEEEEETTCCSTTCCCTTBSSCHHHHHHHHHTCCEECSSCSEEEEEEEEESSEEEEGGGBCCCSSCEESCTTCEE
T ss_pred CCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCEEEEECCCCCCEEECCCCCCCCEEEECCCEEE
T ss_conf 97639999962787664320653667699999971765367427886069994388741895166688988992698789
Q ss_pred EEEC-CCCEEEEEEEEECCCCCEECCCCC---CCCCCCCEECCCCCHH
Q ss_conf 9977-896499999974687632034444---6557543021243111
Q gi|254780237|r 135 CNLD-VDAVVRMELTVSKGHGYVPAKHHR---TENDPIGLITIDALYS 178 (340)
Q Consensus 135 aTl~-~~~~l~iel~ie~G~GY~~~e~~~---~~~~~ig~i~iDa~Fs 178 (340)
|||+ +++.|+|+++|++||||+++++++ .+..++|+||+||+||
T Consensus 81 aTl~~~~~~l~~el~i~~GrGYv~ae~~~~~~~~~~~ig~i~iDa~fS 128 (128)
T 1bdf_A 81 CHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYS 128 (128)
T ss_dssp EEECSTTCEEEEEEEEEECCSEECGGGTC-----CCCCSCCBCCEECC
T ss_pred EEECCCCCEEEEEEEEECCCCEECCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 997578947999999974555130432334432246667250464566