HHsearch alignment of GI: 254780237 and MMDB domain: 1twf_C_41-168
>1twf_C (C:41-168) B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae}
Probab=94.86 E-value=0.062 Score=32.36 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=46.3
Q ss_pred CEEEEEEE----ECCEEEEEEEEECCC-----------CEEEECCCEEEEEECCCCEEEEEEEEECCCCC
Q ss_conf 27999999----447169963351389-----------85998888089997789649999997468763
Q gi|254780237|r 101 HKRVTIFK----RGPGVVTAGDIQTVN-----------DIEVLNPDHVICNLDVDAVVRMELTVSKGHGY 155 (340)
Q Consensus 101 ~~~~~l~~----~Gp~~vtA~Di~~p~-----------~veivNpd~~IaTl~~~~~l~iel~ie~G~GY 155 (340)
+...+|++ .+|..|+++|+++.. .+.-++++-.|+.|..+-.++|++...+|.|=
T Consensus 56 tv~~~L~v~~~~~~~~~V~s~dL~~~~~~~~~~~~~~~~~~p~~~~I~I~KL~~gQ~I~l~~~a~kGiGk 125 (128)
T 1twf_C 56 SVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAK 125 (128)
T ss_dssp EEEEEEEEECCSSSCEEEEGGGEEECSCCTTCSEEEECCCSTTSCCSEEEEECTTCEEEEEEEEEEECTT
T ss_pred CEEEEEEEECCCCCCCEEECHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCC
T ss_conf 2689999624777763345000211144444677886654677897699995798479999999547234