HHsearch alignment of GI: 254780237 and MMDB domain: 1z3e_B_

>1z3e_B (B:) DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis}

Probab=99.86  E-value=7.3e-22  Score=161.39  Aligned_cols=71  Identities=42%  Similarity=0.589  Sum_probs=67.7

Q ss_pred             HHHHHHHCCHHHCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             11233311122101105888989883983718887449888861889886449999999998083126768
Q gi|254780237|r  251 PFNPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGLFLGMNL  321 (340)
Q Consensus       251 ~~~~~L~~~IeeLeLSvRs~NcLk~a~I~tigdLv~~s~~dLl~ikNfG~KSl~EI~~~L~~~gl~lg~~l  321 (340)
                      +.++.+.++|++|+||+|++|||+++||+|||||+++|++||+++||||+||++||+++|+++|++|||+-
T Consensus         2 ~~~~~l~~~I~~L~Ls~R~~N~L~~~gI~ti~dL~~~s~~dLl~i~n~G~kSl~EI~~~L~~~gl~l~~~~   72 (73)
T 1z3e_B            2 EKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGLRKDD   72 (73)
T ss_dssp             -CHHHHTCBGGGSCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHHTTCCCC---
T ss_pred             CCHHHHCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             50566268898835889999999883894799998779999975889766059999999998599889999