HHsearch alignment of GI: 254780237 and MMDB domain: 2a6h_A_1-47_173-315
>2a6h_A (A:1-47,A:173-315) DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=0 Score=394.12 Aligned_cols=181 Identities=34% Similarity=0.467 Sum_probs=162.6
Q ss_pred CCCEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 42015863678881589999616975667888999998741698306889998871443146646244499999840114
Q gi|254780237|r 13 NNIEYIVLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQIDGVLHEISSIKGVHEDLTDIILNIKGI 92 (340)
Q Consensus 13 ~~i~~~~~~~~~~~~g~f~~~Ple~G~g~TlGNaLRRvLLssi~G~ait~vkI~gv~HEfs~i~GV~EDV~eIiLNLK~I 92 (340)
..++. ..++.+++||+|+++||+||||+||||||||||||
T Consensus 7 ~~~e~-~~~~~~~~yg~f~~~Ple~G~g~TiGN~lRR~LLs--------------------------------------- 46 (190)
T 2a6h_A 7 KAPVF-TVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLS--------------------------------------- 46 (190)
T ss_dssp SCCEE-EEEEETTTEEEEEEEEECTTCHHHHHHHHHHHHHH---------------------------------------
T ss_pred CCCEE-EEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHH---------------------------------------
T ss_conf 89567-88756885689999568896175778899999885---------------------------------------
Q ss_pred EEEECCCCCEEEEEEEECCEEEEEEEEECCCCEEEECCCEEEEEECCCCEEEEEEEEECCCCCEECCCCCCCCCCCCEEC
Q ss_conf 17772798279999994471699633513898599888808999778964999999746876320344446557543021
Q gi|254780237|r 93 NLKMSGDSHKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDHVICNLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIGLIT 172 (340)
Q Consensus 93 ~~k~~~~~~~~~~l~~~Gp~~vtA~Di~~p~~veivNpd~~IaTl~~~~~l~iel~ie~G~GY~~~e~~~~~~~~ig~i~ 172 (340)
T Consensus 47 -------------------------------------------------------------------------------- 46 (190)
T 2a6h_A 47 -------------------------------------------------------------------------------- 46 (190)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--HHHCCCC
Q ss_conf 24311114422357764116887762189999993896177799999999999988876224444322100--0000000
Q gi|254780237|r 173 IDALYSPIKKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFINFEEPKKEVKE--DINVKSL 250 (340)
Q Consensus 173 iDa~FsPV~~Vny~Ve~~rvg~~t~~dkL~lEI~TnGsi~P~eAl~~Aa~iL~~~l~~f~~~~~~~~~~~~--~~~~~~~ 250 (340)
|||++|||.|+++|||+.++||||+|||||||||+|++|+++||++|++||.+|.++......... ....+..
T Consensus 47 -----sPV~kVnY~Ve~~~v~~~~~~ekL~leI~TdGsItP~eAl~~Aa~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (190)
T 2a6h_A 47 -----SPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQAAAVAAPEEAKEPEAPP 121 (190)
T ss_dssp -----TCEEEEEEEEEECCBTTBCCCEEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCSCC-----------------
T ss_pred -----CHHHHEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf -----611104457888521777766610599954886452335999999999888763353212223442111111221
Q ss_pred HHHHHHHCCHHHCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 11233311122101105888989883983718887449888861889886449999999998083126
Q gi|254780237|r 251 PFNPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGLFLG 318 (340)
Q Consensus 251 ~~~~~L~~~IeeLeLSvRs~NcLk~a~I~tigdLv~~s~~dLl~ikNfG~KSl~EI~~~L~~~gl~lg 318 (340)
..+..+.++|++|+||+|++||||+|||+|||||+++|++||++++|||+||++||+++|+++||+|.
T Consensus 122 ~~~~~~~~~IeeL~Ls~R~~n~Lk~a~I~ti~dL~~~s~~dL~~i~n~G~ksl~EI~~~L~~~gl~L~ 189 (190)
T 2a6h_A 122 EQEEELDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEKKGFTLK 189 (190)
T ss_dssp --------------------------------------------------------------------
T ss_pred CHHHHHCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 01354268599905878888678775894799988499999845999760559999999998599888