HHsearch alignment of GI: 254780237 and MMDB domain: 2pa8_D_36-153

>2pa8_D (D:36-153) DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymerase assembly, transferase; 1.76A {Sulfolobus solfataricus P2} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D

Probab=96.62  E-value=0.0052  Score=39.31  Aligned_cols=55  Identities=18%  Similarity=0.291  Sum_probs=50.6

Q ss_pred             CCEEEEEEEECCE---EEEEEEEEC-CCCEEEECCCEEEEEECCCCEEEEEEEEECCCC
Q ss_conf             8279999994471---699633513-898599888808999778964999999746876
Q gi|254780237|r  100 SHKRVTIFKRGPG---VVTAGDIQT-VNDIEVLNPDHVICNLDVDAVVRMELTVSKGHG  154 (340)
Q Consensus       100 ~~~~~~l~~~Gp~---~vtA~Di~~-p~~veivNpd~~IaTl~~~~~l~iel~ie~G~G  154 (340)
                      .....+|++++|.   .|+++|+++ ++.+.-++++-.|+.|..+-.++++....+|.|
T Consensus        57 c~v~~~L~v~~~~~~~~VyS~dL~~~~~~v~pv~~~I~I~KL~~gQ~i~l~~~a~kGiG  115 (118)
T 2pa8_D           57 CYTKIYIEAEAPNEPRMIYSKDIKSEDPSVVPISGDIPIVLLGTNQKISLEARLRLGYG  115 (118)
T ss_dssp             TEEEEEEEEECCSSCEEEEGGGCEESSTTCCBSCSCCEEEEECTTCEEEEEEEEEEECT
T ss_pred             EEEEEEEEEECCCCCCEEEHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCC
T ss_conf             48999999884899847984452036997312148806999179956999999995820