HHsearch alignment of GI: 254780237 and MMDB domain: 3gfk_B_

>3gfk_B (B:) DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis}

Probab=99.85  E-value=1.3e-21  Score=159.70  Aligned_cols=74  Identities=41%  Similarity=0.565  Sum_probs=69.6

Q ss_pred             CCCCHHHHHHHCCHHHCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             00001123331112210110588898988398371888744988886188988644999999999808312676
Q gi|254780237|r  247 VKSLPFNPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGLFLGMN  320 (340)
Q Consensus       247 ~~~~~~~~~L~~~IeeLeLSvRs~NcLk~a~I~tigdLv~~s~~dLl~ikNfG~KSl~EI~~~L~~~gl~lg~~  320 (340)
                      .+..+....+.++|++|+||+|++|||+++||+|||||+++|++||++++|||+||++||+++|+++|++|||+
T Consensus         5 ~~~~~~~~~l~~~I~~L~Ls~R~~n~L~~~gI~tv~dL~~~s~~dLl~i~nlG~ksl~EI~~~L~~~gl~l~~~   78 (79)
T 3gfk_B            5 KEEDQKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGLRKD   78 (79)
T ss_dssp             CCCSSCCCGGGCBGGGSCCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHHTTCCCC--
T ss_pred             CCCCHHHHHHCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf             31015679864949984688999999989189679999878999998578986736999999999859989999