HHsearch alignment of GI: 254780237 and MMDB domain: 3h0g_C_39-170

>3h0g_C (C:39-170) DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=93.59  E-value=0.086  Score=31.42  Aligned_cols=55  Identities=15%  Similarity=0.214  Sum_probs=45.9

Q ss_pred             CEEEEEEE----ECCEEEEEEEEECCC-CE-------EEECCCEEEEEECCCCEEEEEEEEECCCCC
Q ss_conf             27999999----447169963351389-85-------998888089997789649999997468763
Q gi|254780237|r  101 HKRVTIFK----RGPGVVTAGDIQTVN-DI-------EVLNPDHVICNLDVDAVVRMELTVSKGHGY  155 (340)
Q Consensus       101 ~~~~~l~~----~Gp~~vtA~Di~~p~-~v-------eivNpd~~IaTl~~~~~l~iel~ie~G~GY  155 (340)
                      +...+|++    .|+..|+++|+++.+ +.       +-++++-.|+.|..+-.++|++...+|.|=
T Consensus        62 tv~f~L~v~~~~~~~~~V~S~dL~~~~~~~~~~~~~~~p~~~~I~I~KL~~gQ~i~l~~~a~kGiGk  128 (132)
T 3h0g_C           62 SVELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKGIAK  128 (132)
T ss_dssp             SCEEEEEECCCCSSCEEEEGGGCBCCSCCSSCCBCCCSTTSCCSEEEEECSSCCEEEEEEEEEECGG
T ss_pred             EEEEEEEEEECCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEEECCCC
T ss_conf             6898887893577745774041662786340586443555788458970577359999999978411