HHsearch alignment of GI: 254780237 and MMDB domain: 3iyd_A_49-180
>3iyd_A (A:49-180) DNA-directed RNA polymerase subunit alpha; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=100.00 E-value=1.4e-45 Score=315.44 Aligned_cols=128 Identities=45% Similarity=0.813 Sum_probs=123.8
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCEEEEEEEECCEEEEEEEEECCCCEEEECCCE
Q ss_conf 16983068899988714431466462444999998401141777279827999999447169963351389859988880
Q gi|254780237|r 53 SSLRGAAITAVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMSGDSHKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDH 132 (340)
Q Consensus 53 ssi~G~ait~vkI~gv~HEfs~i~GV~EDV~eIiLNLK~I~~k~~~~~~~~~~l~~~Gp~~vtA~Di~~p~~veivNpd~ 132 (340)
||++|+|||+|||+||.|||++||||+|||++|+||||+|+|++.++++++++++++||++|||+||++|++++|+||||
T Consensus 1 Ssi~G~aIt~vkI~gv~HEfsti~GV~Edv~eIiLNLK~i~~k~~~~~~~~~~l~~~Gp~~VtA~di~~p~~ieivnpd~ 80 (132)
T 3iyd_A 1 SSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQH 80 (132)
T ss_dssp SSCCCCEEEECCCSSCCSSSSCCTTBSSCTTHHHHGGGTCCEEESSCSCEECCBCEESSSCCCGGGBCCCTTEEESCTTC
T ss_pred HCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCCEEECCCCCCCCEEEECCCE
T ss_conf 66984589999999954430238770452999998557550665268851799960686666822676788889926988
Q ss_pred EEEEEC-CCCEEEEEEEEECCCCCEECCCCC---CCCCCCCEECCCCCHHEE
Q ss_conf 899977-896499999974687632034444---655754302124311114
Q gi|254780237|r 133 VICNLD-VDAVVRMELTVSKGHGYVPAKHHR---TENDPIGLITIDALYSPI 180 (340)
Q Consensus 133 ~IaTl~-~~~~l~iel~ie~G~GY~~~e~~~---~~~~~ig~i~iDa~FsPV 180 (340)
|||||+ +++.|+|+++|++||||++++.++ .+..++|+|++||+||||
T Consensus 81 ~Iatl~~~~~~l~~el~i~~G~GY~~~~~~~~~~~~~~~~g~i~iDa~fsPV 132 (132)
T 3iyd_A 81 VICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYSPV 132 (132)
T ss_dssp CCCCBCSTTCEECCCCEEECCSSCCCHHHHC-----CCSSSCSBCCCCCCSC
T ss_pred EEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 8999757894799999998056602142244553334657733257766776