HHsearch results for GI: 254780237 and protein with PDBid: 1coo_A

>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli K12} SCOP: a.60.3.1 PDB: 2jzb_A

Probab=99.93  E-value=2.9e-27  Score=195.40  Aligned_cols=85  Identities=54%  Similarity=0.970  Sum_probs=79.1

Q ss_pred             CCCCHHHHHHHCCHHHCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf             00001123331112210110588898988398371888744988886188988644999999999808312676878986
Q gi|254780237|r  247 VKSLPFNPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGLFLGMNLPDWPP  326 (340)
Q Consensus       247 ~~~~~~~~~L~~~IeeLeLSvRs~NcLk~a~I~tigdLv~~s~~dLl~ikNfG~KSl~EI~~~L~~~gl~lg~~l~~~~~  326 (340)
                      .+....++.|.++|++|+||+|++|||+++||+|||||+++|++||+++||||+||++||+++|+++||+|||++++|||
T Consensus        13 ee~~~~~~~L~~~I~eL~LSvRs~N~L~~~gI~tvgdLv~~se~dLl~~~n~G~KSl~EIk~~L~~~gL~lgm~l~~~~p   92 (98)
T 1coo_A           13 EEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPP   92 (98)
T ss_dssp             -----CCHHHHSBGGGGTCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHHHTTCCTTCCCSSSSC
T ss_pred             CCCHHHHHHHCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             00034528860969882778999998738179389999857999997588976878999999999859777997899893


Q ss_pred             HHHHH
Q ss_conf             77999
Q gi|254780237|r  327 ESIEE  331 (340)
Q Consensus       327 ~~~~~  331 (340)
                      .++++
T Consensus        93 ~~~~~   97 (98)
T 1coo_A           93 ASIAD   97 (98)
T ss_dssp             STTCC
T ss_pred             CCCCC
T ss_conf             13235