HHsearch results for GI: 254780237 and protein with PDBid: 1twf_C

>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=99.97  E-value=3.8e-31  Score=220.53  Aligned_cols=211  Identities=17%  Similarity=0.186  Sum_probs=161.2

Q ss_pred             ECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE---------CCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             63678881589999616975667888999998741698306889998---------871443146646244499999840
Q gi|254780237|r   19 VLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQI---------DGVLHEISSIKGVHEDLTDIILNI   89 (340)
Q Consensus        19 ~~~~~~~~~g~f~~~Ple~G~g~TlGNaLRRvLLssi~G~ait~vkI---------~gv~HEfs~i~GV~EDV~eIiLNL   89 (340)
                      ++.+.++++.+|.++    |++.|+||||||+|||++|++||+.|+|         +++.|+|+.||++.||+.++..|+
T Consensus         9 ~i~~~~~~~~~f~l~----g~~~siaNaLRR~lLseIp~~Ai~~V~I~~Nts~l~dE~i~HRlglIPi~~~d~~~~~~~~   84 (318)
T 1twf_C            9 KIREASKDNVDFILS----NVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEYSR   84 (318)
T ss_dssp             CCSCCCSSEECCEEB----SSCHHHHHHHHHHHHHCCCEEEEEEEEEEEECSSSCHHHHHHHHHTSCEEETTGGGSCCTT
T ss_pred             EEEECCCCEEEEEEE----CCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHCC
T ss_conf             999867998999997----8881799999999987395127999999767764566623688632676335777832111


Q ss_pred             CCCEEEECCCCCEEEEEEEEC----CEEEEEEEEECCCCE-----------EEECCCEEEEEECCCCEEEEEEEEECCCC
Q ss_conf             114177727982799999944----716996335138985-----------99888808999778964999999746876
Q gi|254780237|r   90 KGINLKMSGDSHKRVTIFKRG----PGVVTAGDIQTVNDI-----------EVLNPDHVICNLDVDAVVRMELTVSKGHG  154 (340)
Q Consensus        90 K~I~~k~~~~~~~~~~l~~~G----p~~vtA~Di~~p~~v-----------eivNpd~~IaTl~~~~~l~iel~ie~G~G  154 (340)
                      +.+.+...+.......|++++    |..|+|+|+..++..           .+.+++.+||+|..+..|+|++++..|+|
T Consensus        85 ~~~~~~~~~~~~v~~~L~v~~~~~~~~~Vts~Di~~~~~~~~~~~~~p~~~~~~~~~IlI~kL~~gq~l~l~~~~~~G~g  164 (318)
T 1twf_C           85 DCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIA  164 (318)
T ss_dssp             TSSSSSCCTTTEEEEEEEEECCSSSCEEEEGGGEEECSCCTTCSEEEECCCSTTSCCSEEEEECTTCEEEEEEEEEEECT
T ss_pred             CCCCCCCCCCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCC
T ss_conf             34210368873599999964577765401135534567544467788655466789759999668957999999983873


Q ss_pred             CEECCCC-------------CCCCCCCCEECCCCCHHEEEEEEE----EEEEECCCCCCCCCEEEEEEEECCCCCHHHHH
Q ss_conf             3203444-------------465575430212431111442235----77641168877621899999938961777999
Q gi|254780237|r  155 YVPAKHH-------------RTENDPIGLITIDALYSPIKKVSY----TVESAREGQVLDYDKLSMTIDTDGSITGEDSV  217 (340)
Q Consensus       155 Y~~~e~~-------------~~~~~~ig~i~iDa~FsPV~~Vny----~Ve~~rvg~~t~~dkL~lEI~TnGsi~P~eAl  217 (340)
                      +..|..+             +...........+..+.|..+...    ..+..++......+++.|+|||+|+++|+++|
T Consensus       165 kehak~~pvs~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~F~IET~G~~~p~~il  244 (318)
T 1twf_C          165 KEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQVV  244 (318)
T ss_dssp             TTCGGGCCEEEEEEEECSSTTSCCSCCCCSSCHHHHSCCCGGGTTSCCCCSSSCCCTTCCCCCEEEEEEECSSSCHHHHH
T ss_pred             CCCCEECCCCEEEEEECCCCCCCCCCCCEECCCHHHCCCCCCEEEECCCCCCCEEEEECCCCEEEEEEEECCCCCHHHHH
T ss_conf             33556555412676515543335553332204331088653036862344554058743664899999945877999999


Q ss_pred             HHHHHHHHHHHHHHHC
Q ss_conf             9999999998887622
Q gi|254780237|r  218 ALASRILQDQLGMFIN  233 (340)
Q Consensus       218 ~~Aa~iL~~~l~~f~~  233 (340)
                      .+|+++|++.|..|..
T Consensus       245 ~~A~~iL~~Kl~~l~~  260 (318)
T 1twf_C          245 VRGIDTLQKKVASILL  260 (318)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999999