HHsearch results for GI: 254780237 and protein with PDBid: 1twf_C
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=99.97 E-value=3.8e-31 Score=220.53 Aligned_cols=211 Identities=17% Similarity=0.186 Sum_probs=161.2
Q ss_pred ECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE---------CCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 63678881589999616975667888999998741698306889998---------871443146646244499999840
Q gi|254780237|r 19 VLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQI---------DGVLHEISSIKGVHEDLTDIILNI 89 (340)
Q Consensus 19 ~~~~~~~~~g~f~~~Ple~G~g~TlGNaLRRvLLssi~G~ait~vkI---------~gv~HEfs~i~GV~EDV~eIiLNL 89 (340)
++.+.++++.+|.++ |++.|+||||||+|||++|++||+.|+| +++.|+|+.||++.||+.++..|+
T Consensus 9 ~i~~~~~~~~~f~l~----g~~~siaNaLRR~lLseIp~~Ai~~V~I~~Nts~l~dE~i~HRlglIPi~~~d~~~~~~~~ 84 (318)
T 1twf_C 9 KIREASKDNVDFILS----NVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEYSR 84 (318)
T ss_dssp CCSCCCSSEECCEEB----SSCHHHHHHHHHHHHHCCCEEEEEEEEEEEECSSSCHHHHHHHHHTSCEEETTGGGSCCTT
T ss_pred EEEECCCCEEEEEEE----CCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHCC
T ss_conf 999867998999997----8881799999999987395127999999767764566623688632676335777832111
Q ss_pred CCCEEEECCCCCEEEEEEEEC----CEEEEEEEEECCCCE-----------EEECCCEEEEEECCCCEEEEEEEEECCCC
Q ss_conf 114177727982799999944----716996335138985-----------99888808999778964999999746876
Q gi|254780237|r 90 KGINLKMSGDSHKRVTIFKRG----PGVVTAGDIQTVNDI-----------EVLNPDHVICNLDVDAVVRMELTVSKGHG 154 (340)
Q Consensus 90 K~I~~k~~~~~~~~~~l~~~G----p~~vtA~Di~~p~~v-----------eivNpd~~IaTl~~~~~l~iel~ie~G~G 154 (340)
+.+.+...+.......|++++ |..|+|+|+..++.. .+.+++.+||+|..+..|+|++++..|+|
T Consensus 85 ~~~~~~~~~~~~v~~~L~v~~~~~~~~~Vts~Di~~~~~~~~~~~~~p~~~~~~~~~IlI~kL~~gq~l~l~~~~~~G~g 164 (318)
T 1twf_C 85 DCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIA 164 (318)
T ss_dssp TSSSSSCCTTTEEEEEEEEECCSSSCEEEEGGGEEECSCCTTCSEEEECCCSTTSCCSEEEEECTTCEEEEEEEEEEECT
T ss_pred CCCCCCCCCCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCC
T ss_conf 34210368873599999964577765401135534567544467788655466789759999668957999999983873
Q ss_pred CEECCCC-------------CCCCCCCCEECCCCCHHEEEEEEE----EEEEECCCCCCCCCEEEEEEEECCCCCHHHHH
Q ss_conf 3203444-------------465575430212431111442235----77641168877621899999938961777999
Q gi|254780237|r 155 YVPAKHH-------------RTENDPIGLITIDALYSPIKKVSY----TVESAREGQVLDYDKLSMTIDTDGSITGEDSV 217 (340)
Q Consensus 155 Y~~~e~~-------------~~~~~~ig~i~iDa~FsPV~~Vny----~Ve~~rvg~~t~~dkL~lEI~TnGsi~P~eAl 217 (340)
+..|..+ +...........+..+.|..+... ..+..++......+++.|+|||+|+++|+++|
T Consensus 165 kehak~~pvs~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~F~IET~G~~~p~~il 244 (318)
T 1twf_C 165 KEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQVV 244 (318)
T ss_dssp TTCGGGCCEEEEEEEECSSTTSCCSCCCCSSCHHHHSCCCGGGTTSCCCCSSSCCCTTCCCCCEEEEEEECSSSCHHHHH
T ss_pred CCCCEECCCCEEEEEECCCCCCCCCCCCEECCCHHHCCCCCCEEEECCCCCCCEEEEECCCCEEEEEEEECCCCCHHHHH
T ss_conf 33556555412676515543335553332204331088653036862344554058743664899999945877999999
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999998887622
Q gi|254780237|r 218 ALASRILQDQLGMFIN 233 (340)
Q Consensus 218 ~~Aa~iL~~~l~~f~~ 233 (340)
.+|+++|++.|..|..
T Consensus 245 ~~A~~iL~~Kl~~l~~ 260 (318)
T 1twf_C 245 VRGIDTLQKKVASILL 260 (318)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999