HHsearch results for GI: 254780237 and protein with PDBid: 3h0g_C
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.9e-32 Score=228.88 Aligned_cols=211 Identities=18% Similarity=0.227 Sum_probs=172.1
Q ss_pred ECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE---------CCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 63678881589999616975667888999998741698306889998---------871443146646244499999840
Q gi|254780237|r 19 VLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQI---------DGVLHEISSIKGVHEDLTDIILNI 89 (340)
Q Consensus 19 ~~~~~~~~~g~f~~~Ple~G~g~TlGNaLRRvLLssi~G~ait~vkI---------~gv~HEfs~i~GV~EDV~eIiLNL 89 (340)
.+.+.+++..+|.++ |.+.|++|||||+|||++|++||+.|+| +++.|+|+.||++.|++.++.+|+
T Consensus 8 ~i~~~~~~~~~f~l~----~~~~s~aNaLRR~lls~ip~~ai~~v~I~~Nts~l~dE~i~hRl~lIPi~~~~~~~~~~~~ 83 (297)
T 3h0g_C 8 TIRNISKNSVDFVLT----NTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRLGMIPLDSSNIDEPPPVG 83 (297)
T ss_dssp CCCCBCSSEEEEEEC----SCCHHHHHHHHHHHHSSCCEEEEEEEEEEEECSSSCHHHHHHHHHHSCBCCTTCSSCSSSC
T ss_pred EEEECCCCEEEEEEE----CCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCEECCCCCCCHHH
T ss_conf 999845987999997----8880677899999987384207999999767864555312677314675202522022001
Q ss_pred CCCEEEECCCC-----CEEEEEEE----ECCEEEEEEEEECCCCEE--------EECCCEEEEEECCCCEEEEEEEEECC
Q ss_conf 11417772798-----27999999----447169963351389859--------98888089997789649999997468
Q gi|254780237|r 90 KGINLKMSGDS-----HKRVTIFK----RGPGVVTAGDIQTVNDIE--------VLNPDHVICNLDVDAVVRMELTVSKG 152 (340)
Q Consensus 90 K~I~~k~~~~~-----~~~~~l~~----~Gp~~vtA~Di~~p~~ve--------ivNpd~~IaTl~~~~~l~iel~ie~G 152 (340)
+...++..... ....++.+ .||+.|+|+|+++++.-+ .++|+++||+|..+..|+|++++..|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~s~dl~~~~~~~~~~~~~~~~~~~~i~I~~L~~gq~L~le~~a~~G 163 (297)
T 3h0g_C 84 LEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKG 163 (297)
T ss_dssp CCCSSSCSSSSSCGGGSCEEEEEECCCCSSCEEEEGGGCBCCSCCSSCCBCCCSTTSCCSEEEEECSSCCEEEEEEEEEE
T ss_pred EEEEEECCCCCCCCCCEEEEEEEEECCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEEEC
T ss_conf 00111014456776525899998870567843676031687786430586433555689627980367369999999948
Q ss_pred CCCEECCCCC-------------CCCCCCCEECCCCCHHEEEEEEEEEEEECCCCCCCC----CEEEEEEEECCCCCHHH
Q ss_conf 7632034444-------------655754302124311114422357764116887762----18999999389617779
Q gi|254780237|r 153 HGYVPAKHHR-------------TENDPIGLITIDALYSPIKKVSYTVESAREGQVLDY----DKLSMTIDTDGSITGED 215 (340)
Q Consensus 153 ~GY~~~e~~~-------------~~~~~ig~i~iDa~FsPV~~Vny~Ve~~rvg~~t~~----dkL~lEI~TnGsi~P~e 215 (340)
+|+..|..+. ......+....+..+.|..++.+..+..+.++..++ ++++|+|||+|+++|++
T Consensus 164 ~Gk~hak~spvs~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~F~IES~G~l~p~~ 243 (297)
T 3h0g_C 164 IAKEHAKWSPTSAVAFEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGSIPPNE 243 (297)
T ss_dssp CGGGCTTSCCBCCCCCCSSSSCSSCCSCCCCSSCSTTTSCCCGGGTTCCCCSCCSCCCSSCCCCCEEEEEEBCSSSCTTT
T ss_pred CCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCHHHCCCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECCCCCHHH
T ss_conf 72222524663025653145101102433321231121356532137860455530577605768999999516659999
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 999999999998887622
Q gi|254780237|r 216 SVALASRILQDQLGMFIN 233 (340)
Q Consensus 216 Al~~Aa~iL~~~l~~f~~ 233 (340)
||.+|+++|+++|..|..
T Consensus 244 il~~A~~iL~~kl~~~~~ 261 (297)
T 3h0g_C 244 IMVQGLRILQEKLAVLVR 261 (297)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999