HHsearch results for GI: 254780237 and protein with PDBid: 3h0g_C

>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.97  E-value=1.9e-32  Score=228.88  Aligned_cols=211  Identities=18%  Similarity=0.227  Sum_probs=172.1

Q ss_pred             ECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE---------CCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             63678881589999616975667888999998741698306889998---------871443146646244499999840
Q gi|254780237|r   19 VLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQI---------DGVLHEISSIKGVHEDLTDIILNI   89 (340)
Q Consensus        19 ~~~~~~~~~g~f~~~Ple~G~g~TlGNaLRRvLLssi~G~ait~vkI---------~gv~HEfs~i~GV~EDV~eIiLNL   89 (340)
                      .+.+.+++..+|.++    |.+.|++|||||+|||++|++||+.|+|         +++.|+|+.||++.|++.++.+|+
T Consensus         8 ~i~~~~~~~~~f~l~----~~~~s~aNaLRR~lls~ip~~ai~~v~I~~Nts~l~dE~i~hRl~lIPi~~~~~~~~~~~~   83 (297)
T 3h0g_C            8 TIRNISKNSVDFVLT----NTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRLGMIPLDSSNIDEPPPVG   83 (297)
T ss_dssp             CCCCBCSSEEEEEEC----SCCHHHHHHHHHHHHSSCCEEEEEEEEEEEECSSSCHHHHHHHHHHSCBCCTTCSSCSSSC
T ss_pred             EEEECCCCEEEEEEE----CCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCEECCCCCCCHHH
T ss_conf             999845987999997----8880677899999987384207999999767864555312677314675202522022001


Q ss_pred             CCCEEEECCCC-----CEEEEEEE----ECCEEEEEEEEECCCCEE--------EECCCEEEEEECCCCEEEEEEEEECC
Q ss_conf             11417772798-----27999999----447169963351389859--------98888089997789649999997468
Q gi|254780237|r   90 KGINLKMSGDS-----HKRVTIFK----RGPGVVTAGDIQTVNDIE--------VLNPDHVICNLDVDAVVRMELTVSKG  152 (340)
Q Consensus        90 K~I~~k~~~~~-----~~~~~l~~----~Gp~~vtA~Di~~p~~ve--------ivNpd~~IaTl~~~~~l~iel~ie~G  152 (340)
                      +...++.....     ....++.+    .||+.|+|+|+++++.-+        .++|+++||+|..+..|+|++++..|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~s~dl~~~~~~~~~~~~~~~~~~~~i~I~~L~~gq~L~le~~a~~G  163 (297)
T 3h0g_C           84 LEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPILADPKSRGPLICKLRKEQEISLRCIAKKG  163 (297)
T ss_dssp             CCCSSSCSSSSSCGGGSCEEEEEECCCCSSCEEEEGGGCBCCSCCSSCCBCCCSTTSCCSEEEEECSSCCEEEEEEEEEE
T ss_pred             EEEEEECCCCCCCCCCEEEEEEEEECCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEEEC
T ss_conf             00111014456776525899998870567843676031687786430586433555689627980367369999999948


Q ss_pred             CCCEECCCCC-------------CCCCCCCEECCCCCHHEEEEEEEEEEEECCCCCCCC----CEEEEEEEECCCCCHHH
Q ss_conf             7632034444-------------655754302124311114422357764116887762----18999999389617779
Q gi|254780237|r  153 HGYVPAKHHR-------------TENDPIGLITIDALYSPIKKVSYTVESAREGQVLDY----DKLSMTIDTDGSITGED  215 (340)
Q Consensus       153 ~GY~~~e~~~-------------~~~~~ig~i~iDa~FsPV~~Vny~Ve~~rvg~~t~~----dkL~lEI~TnGsi~P~e  215 (340)
                      +|+..|..+.             ......+....+..+.|..++.+..+..+.++..++    ++++|+|||+|+++|++
T Consensus       164 ~Gk~hak~spvs~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~F~IES~G~l~p~~  243 (297)
T 3h0g_C          164 IAKEHAKWSPTSAVAFEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPFNFQEEPRRFYMDVESVGSIPPNE  243 (297)
T ss_dssp             CGGGCTTSCCBCCCCCCSSSSCSSCCSCCCCSSCSTTTSCCCGGGTTCCCCSCCSCCCSSCCCCCEEEEEEBCSSSCTTT
T ss_pred             CCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCHHHCCCCCCCEEEEECCCCCEEEEEECCCEEEEEEEECCCCCHHH
T ss_conf             72222524663025653145101102433321231121356532137860455530577605768999999516659999


Q ss_pred             HHHHHHHHHHHHHHHHHC
Q ss_conf             999999999998887622
Q gi|254780237|r  216 SVALASRILQDQLGMFIN  233 (340)
Q Consensus       216 Al~~Aa~iL~~~l~~f~~  233 (340)
                      ||.+|+++|+++|..|..
T Consensus       244 il~~A~~iL~~kl~~~~~  261 (297)
T 3h0g_C          244 IMVQGLRILQEKLAVLVR  261 (297)
T ss_dssp             TTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999