HHsearch results for GI: 254780237 and protein with PDBid: 3k4g_A

>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} PDB: 1lb2_B* 1xs9_D

Probab=99.93  E-value=7.8e-27  Score=192.58  Aligned_cols=83  Identities=53%  Similarity=0.938  Sum_probs=78.3

Q ss_pred             CCHHHHHHHCCHHHCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf             00112333111221011058889898839837188874498888618898864499999999980831267687898677
Q gi|254780237|r  249 SLPFNPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGLFLGMNLPDWPPES  328 (340)
Q Consensus       249 ~~~~~~~L~~~IeeLeLSvRs~NcLk~a~I~tigdLv~~s~~dLl~ikNfG~KSl~EI~~~L~~~gl~lg~~l~~~~~~~  328 (340)
                      ..+.++.|.++|++|+||+|++|||+++||+|||||+++|++||+++||||+||++||+++|+++||+|||++++|||.+
T Consensus         3 ~~e~~~~L~~~I~eL~LSvR~~N~Lk~~gI~tvgdLv~~se~dLl~i~NfG~kSl~EI~~~L~~~gL~lgm~l~~~~p~~   82 (86)
T 3k4g_A            3 XPEFDPILLRPVDDLELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLASRGLSLGMRLENWPPAS   82 (86)
T ss_dssp             CCCCCGGGGSBGGGGCCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHTTTCCSSCCEESBSCCE
T ss_pred             CCCCCHHHCCCHHHHCCCHHHHHHHCCCCCCCHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             42108887196987278899998725543937999984899998178898772699999999985988899799989412


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780237|r  329 IEE  331 (340)
Q Consensus       329 ~~~  331 (340)
                      +++
T Consensus        83 ~~~   85 (86)
T 3k4g_A           83 IAD   85 (86)
T ss_dssp             ECC
T ss_pred             CCC
T ss_conf             133