Probab=99.96 E-value=7.9e-30 Score=210.44 Aligned_cols=105 Identities=41% Similarity=0.694 Sum_probs=96.7 Q ss_pred CCHHHHCCCCCCCEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCHHHH Q ss_conf 22057517974201586367888158999961697566788899999874169830688999887144314664624449 Q gi|254780237|r 3 QKNWQELIKPNNIEYIVLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQIDGVLHEISSIKGVHEDL 82 (340) Q Consensus 3 ~~~~~~~~~P~~i~~~~~~~~~~~~g~f~~~Ple~G~g~TlGNaLRRvLLssi~G~ait~vkI~gv~HEfs~i~GV~EDV 82 (340) |..+.+|++|+.+.+ +..++++++|.++|+|||||+|+||++||+|+|+++ T Consensus 1 ~~s~~eil~P~~v~i---~~~~~~~~k~~~eplErG~Gyt~gn~lr~~llSs~s-------------------------- 51 (105) T d1bdfa1 1 QGSVTEFLKPRLVDI---EQVSSTHAKVTLEPLERGFGHTLGNALRAILLSSMP-------------------------- 51 (105) T ss_dssp CCCSSCSCCCCEEEE---EESSSSEEEEEEEEEETTHHHHHHHHHHHHHTTSCC-------------------------- T ss_pred CCCHHHHCCCCEEEE---EECCCCEEEEEEEECCCCCCCCCCCCCCHHHHHCCC-------------------------- T ss_conf 964755019877899---965896589999874677620243232101120246-------------------------- Q ss_pred HHHHHHHCCCEEEECCCCCEEEEEEEECCEEEEEEEEECCCCEEEECCCEEEEEECCCCEEEEEEEEECCCCCEECCCCC Q ss_conf 99998401141777279827999999447169963351389859988880899977896499999974687632034444 Q gi|254780237|r 83 TDIILNIKGINLKMSGDSHKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDHVICNLDVDAVVRMELTVSKGHGYVPAKHHR 162 (340) Q Consensus 83 ~eIiLNLK~I~~k~~~~~~~~~~l~~~Gp~~vtA~Di~~p~~veivNpd~~IaTl~~~~~l~iel~ie~G~GY~~~e~~~ 162 (340) T Consensus 52 -------------------------------------------------------------------------------- 51 (105) T d1bdfa1 52 -------------------------------------------------------------------------------- 51 (105) T ss_dssp -------------------------------------------------------------------------------- T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred CCCCCCCEECCCCCHHEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 6557543021243111144223577641168877621899999938961777999999999999888762 Q gi|254780237|r 163 TENDPIGLITIDALYSPIKKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFI 232 (340) Q Consensus 163 ~~~~~ig~i~iDa~FsPV~~Vny~Ve~~rvg~~t~~dkL~lEI~TnGsi~P~eAl~~Aa~iL~~~l~~f~ 232 (340) ||++|+|.|+++|+|+++|||||+|||||||||+|+||+++||+||++||.+|+ T Consensus 52 ----------------PV~~V~y~Ve~~~~e~~td~d~L~lei~TnGsi~p~eA~~~Aa~il~~~~~~f~ 105 (105) T d1bdfa1 52 ----------------PVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV 105 (105) T ss_dssp ----------------SEEEEEEECCBCCCSSCSSEEEEEEEEEECSSSCHHHHHHHHHHHHHHHGGGGC T ss_pred ----------------CEEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHC T ss_conf ----------------605787761064047787515799999948978999999999999999988459
class: Alpha and beta proteins (a+b)
fold: DCoH-like
superfamily: RBP11-like subunits of RNA polymerase
family: RNA polymerase alpha subunit dimerisation domain
domain: RNA polymerase alpha
species: Escherichia coli [TaxId: 562]