HHSEARCH alignment of GI: 254780237 and SCOP domain: d1bdfa2

Alignment
>d1bdfa2 d.181.1.1 (A:53-178) RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=5.3e-43  Score=295.72  Aligned_cols=122  Identities=45%  Similarity=0.807  Sum_probs=117.0

Q ss_pred             CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCEEEEEEEECCEEEEEEEEECCCCEEEECCCEEEEE
Q ss_conf             30688999887144314664624449999984011417772798279999994471699633513898599888808999
Q gi|254780237|r   57 GAAITAVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMSGDSHKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDHVICN  136 (340)
Q Consensus        57 G~ait~vkI~gv~HEfs~i~GV~EDV~eIiLNLK~I~~k~~~~~~~~~~l~~~Gp~~vtA~Di~~p~~veivNpd~~IaT  136 (340)
                      |+|||+|||+||.|||++||||+|||++|+||||+|+|++++++++.++|+++|||.|||+||++|+++||+||||||||
T Consensus         1 G~AIt~vkI~Gv~HEfsti~GV~EDV~~IiLNLK~i~~k~~~~~~~~~~l~~~gp~~VtA~di~~~~~veIvNpd~~Iat   80 (126)
T d1bdfa2           1 GCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHVICH   80 (126)
T ss_dssp             CEEEEEEEETTCCSTTCCCTTBSSCHHHHHHHHHTCCEECSSCSEEEEEEEEESSEEEEGGGBCCCSSCEESCTTCEEEE
T ss_pred             CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCCEEEECCCCCCCEEEECCCEEEEE
T ss_conf             97779999889531021378814669999973435457851788638999935852389734137898799677639999


Q ss_pred             EC-CCCEEEEEEEEECCCCCEECCCCC---CCCCCCCEECCCCCHH
Q ss_conf             77-896499999974687632034444---6557543021243111
Q gi|254780237|r  137 LD-VDAVVRMELTVSKGHGYVPAKHHR---TENDPIGLITIDALYS  178 (340)
Q Consensus       137 l~-~~~~l~iel~ie~G~GY~~~e~~~---~~~~~ig~i~iDa~Fs  178 (340)
                      ++ +++.|+||++|++||||+|++.++   .+..++|+|++||+||
T Consensus        81 lt~~~~~l~mel~v~~GrGYv~ae~~~~~~~~~~~ig~I~iDa~FS  126 (126)
T d1bdfa2          81 LTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACYS  126 (126)
T ss_dssp             ECSTTCEEEEEEEEEECCSEECGGGTC-----CCCCSCCBCCEECC
T ss_pred             EECCCCEEEEEEEEECCCCEECCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf             8047850899999967877504421344555677664788677789


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Insert subdomain of RNA polymerase alpha subunit
superfamily: Insert subdomain of RNA polymerase alpha subunit
family: Insert subdomain of RNA polymerase alpha subunit
domain: RNA polymerase alpha subunit
species: Escherichia coli [TaxId: 562]