HHSEARCH alignment of GI: 254780237 and SCOP domain: d1z3eb1

Alignment

Probab=99.83  E-value=5e-21  Score=153.42  Aligned_cols=65  Identities=46%  Similarity=0.684  Sum_probs=63.3

Q ss_pred             HHHHHCCHHHCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             23331112210110588898988398371888744988886188988644999999999808312
Q gi|254780237|r  253 NPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGLFL  317 (340)
Q Consensus       253 ~~~L~~~IeeLeLSvRs~NcLk~a~I~tigdLv~~s~~dLl~ikNfG~KSl~EI~~~L~~~gl~l  317 (340)
                      ++.|.++|++|+||+|++|||+++||+|||||+++|++||+++||||+||++||+++|+++||+|
T Consensus         2 ~~~L~~~I~~L~LS~R~~N~Lk~~~I~tv~dL~~~s~~dLl~~~nfG~kSl~EIk~~L~~~gL~l   66 (67)
T d1z3eb1           2 EKVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGL   66 (67)
T ss_dssp             HHHHTCBGGGSCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHHTTCCC
T ss_pred             CCHHCCCHHHHCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             51421889980688899999989399579999878899997578976604999999999967978

SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: C-terminal domain of RNA polymerase alpha subunit
family: C-terminal domain of RNA polymerase alpha subunit
domain: C-terminal domain of RNA polymerase alpha subunit
species: Bacillus subtilis [TaxId: 1423]