HHSEARCH alignment of GI: 254780237 and SCOP domain: d2i1qa1

Alignment

Probab=94.05  E-value=0.067  Score=29.60  Aligned_cols=49  Identities=6%  Similarity=0.070  Sum_probs=42.0

Q ss_pred             CCHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf             1058889898839837188874498888618898864499999999980
Q gi|254780237|r  265 LSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTM  313 (340)
Q Consensus       265 LSvRs~NcLk~a~I~tigdLv~~s~~dLl~ikNfG~KSl~EI~~~L~~~  313 (340)
                      .......-|..+|+.|+.+|..-+.++|.++++||++..+.|.+...++
T Consensus         7 IG~~~a~~L~~~G~~tv~~l~~a~~eeL~~i~Gi~~~~A~~i~~~ar~~   55 (60)
T d2i1qa1           7 VGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDL   55 (60)
T ss_dssp             CCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             8999999999836999999985999999877898999999999999987

SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Archaeon Methanococcus voltae [TaxId: 2188]