BLAST/PSIBLAST alignment of GI: 254780237 and GI: 15889218 at iteration 1
>gi|15889218|ref|NP_354899.1| DNA-directed RNA polymerase subunit alpha [Agrobacterium tumefaciens str. C58] Length = 336
>gi|325293312|ref|YP_004279176.1| DNA-directed RNA polymerase subunit alpha [Agrobacterium sp. H13-3] Length = 336
>gi|61234197|sp|P0A4E3|RPOA_AGRT5 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha Length = 336
>gi|61234204|sp|P0A4E4|RPOA_RHIRD RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha Length = 336
>gi|5712306|gb|AAD47422.1|AF111855_1 RNA polymerase alpha subunit [Agrobacterium tumefaciens] Length = 336
>gi|15157043|gb|AAK87684.1| DNA-directed RNA polymerase alpha subunit [Agrobacterium tumefaciens str. C58] Length = 336
>gi|325061165|gb|ADY64856.1| DNA-directed RNA polymerase subunit alpha [Agrobacterium sp. H13-3] Length = 336
 Score =  488 bits (1257), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 234/339 (69%), Positives = 282/339 (83%), Gaps = 4/339 (1%)

Query: 1   MIQKNWQELIKPNNIEYIVLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAI 60
           MIQKNWQELIKPN +E+         +  ++AEPL RGF  TLGNALRRVL+SSLRGAA+
Sbjct: 1   MIQKNWQELIKPNKVEFT---SSSRTKATLVAEPLERGFGLTLGNALRRVLLSSLRGAAV 57

Query: 61  TAVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMSGDSHKRVTIFKRGPGVVTAGDIQ 120
           TAVQIDGVLHE SSI GV ED+TDI+LNIK I +KM GD  KR+ + K+GPG VTAGDIQ
Sbjct: 58  TAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDSKRMVVRKQGPGSVTAGDIQ 117

Query: 121 TVNDIEVLNPDHVICNLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALYSPI 180
           TV DIE+LNPDHVIC LD  A +RME TV+ G GYVPA+ +R E+ PIGLI +D+LYSP+
Sbjct: 118 TVGDIEILNPDHVICTLDEGAEIRMEFTVNNGKGYVPAERNRAEDAPIGLIPVDSLYSPV 177

Query: 181 KKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFINFEEPKKE 240
           KKVSY VE+ REGQVLDYDKL MTI+T+GS++GED+VA A+RILQDQLG+F+NF+EP+KE
Sbjct: 178 KKVSYKVENTREGQVLDYDKLIMTIETNGSVSGEDAVAFAARILQDQLGVFVNFDEPQKE 237

Query: 241 VKEDINVKSLPFNPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGR 300
            +E+ +V  L FNPALLKKV+ELELSVRS NCL+ +NIVY+GDLIQ+TEA+MLR  NFGR
Sbjct: 238 AEEE-SVTELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGR 296

Query: 301 KSLVEIKGVLGTMGLFLGMNLPDWPPESIEELAKKYEDK 339
           KSL EIK VL +MGL LGM +P WPPE+IE+LAK+YED+
Sbjct: 297 KSLNEIKEVLASMGLHLGMEVPAWPPENIEDLAKRYEDQ 335