BLAST/PSIBLAST alignment of GI: 254780237 and GI: 222148390 at iteration 1

>gi|222148390|ref|YP_002549347.1| DNA-directed RNA polymerase subunit alpha [Agrobacterium vitis S4] Length = 336
>gi|254765240|sp|B9JVR1|RPOA_AGRVS RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha Length = 336
>gi|221735378|gb|ACM36341.1| DNA-directed RNA polymerase alpha subunit [Agrobacterium vitis S4] Length = 336

 Score =  487 bits (1254), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 234/339 (69%), Positives = 282/339 (83%), Gaps = 4/339 (1%)

Query: 1   MIQKNWQELIKPNNIEYIVLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAI 60
           MIQKNWQELIKPN +E+   G+    +  ++AEPL RGF  TLGNALRRVL+SSLRGAA+
Sbjct: 1   MIQKNWQELIKPNKVEFSSSGR---TKATLVAEPLERGFGLTLGNALRRVLLSSLRGAAV 57

Query: 61  TAVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMSGDSHKRVTIFKRGPGVVTAGDIQ 120
           TAVQIDGVLHE SSI GV ED+TDI+LNIK I +KM GD  KR+ + K+GPGVVTAGDIQ
Sbjct: 58  TAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDAKRMVVRKQGPGVVTAGDIQ 117

Query: 121 TVNDIEVLNPDHVICNLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALYSPI 180
           TV DIE+LNP HVIC LD  A +RME TV+ G GYVPA  +R E+ PIGLI +D+LYSP+
Sbjct: 118 TVGDIEILNPHHVICTLDEGAEIRMEFTVNNGKGYVPADRNRAEDAPIGLIPVDSLYSPV 177

Query: 181 KKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFINFEEPKKE 240
           KKVSY VE+ REGQVLDYDKL+MTI+TDGS++GED+VA A+RILQDQL +F+NF+EP++E
Sbjct: 178 KKVSYKVENTREGQVLDYDKLTMTIETDGSVSGEDAVAFAARILQDQLSVFVNFDEPQRE 237

Query: 241 VKEDINVKSLPFNPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGR 300
            +E+  V  L FNPALLKKV+ELELSVRS NCL+ +NIVY+GDLIQ+TEA+MLR  NFGR
Sbjct: 238 AEEEA-VTELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGR 296

Query: 301 KSLVEIKGVLGTMGLFLGMNLPDWPPESIEELAKKYEDK 339
           KSL EIK VL +MGL LGM +P WPPE+IE+LAK+YED+
Sbjct: 297 KSLNEIKEVLASMGLHLGMEVPAWPPENIEDLAKRYEDQ 335