BLAST/PSIBLAST alignment of GI: 254780237 and GI: 319783344 at iteration 1
>gi|319783344|ref|YP_004142820.1| DNA-directed RNA polymerase subunit alpha [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 336
>gi|317169232|gb|ADV12770.1| DNA-directed RNA polymerase, alpha subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 336
Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/339 (69%), Positives = 281/339 (82%), Gaps = 4/339 (1%)
Query: 1 MIQKNWQELIKPNNIEYIVLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAI 60
MIQKNWQELIKPN IE+ +++ T ++AEPL RGF TLGNALRRVL+SSLRGAA+
Sbjct: 1 MIQKNWQELIKPNKIEF---SSKKKTLTTLVAEPLERGFGLTLGNALRRVLLSSLRGAAV 57
Query: 61 TAVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMSGDSHKRVTIFKRGPGVVTAGDIQ 120
TAVQIDGVLHE SSI GV ED+TDI+LNIK I ++M GD KR+ + K+GPG V AGDIQ
Sbjct: 58 TAVQIDGVLHEFSSIAGVREDVTDIVLNIKEIAIRMEGDGPKRMVVRKQGPGAVLAGDIQ 117
Query: 121 TVNDIEVLNPDHVICNLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALYSPI 180
TV D+E+LNPDHVIC LD A +RME TV G GYVPA +R E+ PIGLI +D+LYSP+
Sbjct: 118 TVGDVEILNPDHVICTLDEGAEIRMEFTVDTGKGYVPADRNRAEDAPIGLIPVDSLYSPV 177
Query: 181 KKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFINFEEPKKE 240
KKVSY VE+ REGQVLDYDKL+MTI+TDGSITGED+VA A+RILQDQLG+F+NF+EP+KE
Sbjct: 178 KKVSYKVENTREGQVLDYDKLTMTIETDGSITGEDAVAFAARILQDQLGLFVNFDEPQKE 237
Query: 241 VKEDINVKSLPFNPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGR 300
V + V L FNPALLKKV+ELELSVRS NCL+ +NIVY+GDLIQ+TEA+MLR NFGR
Sbjct: 238 VAAEA-VTELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGR 296
Query: 301 KSLVEIKGVLGTMGLFLGMNLPDWPPESIEELAKKYEDK 339
KSL EIK VL MGL LGM +PDWPPE+IE+LAK+YED+
Sbjct: 297 KSLNEIKEVLAAMGLHLGMEVPDWPPENIEDLAKRYEDQ 335