BLAST/PSIBLAST alignment of GI: 254780237 and GI: 86357329 at iteration 1
>gi|86357329|ref|YP_469221.1| DNA-directed RNA polymerase subunit alpha [Rhizobium etli CFN 42] Length = 336
>gi|116251564|ref|YP_767402.1| DNA-directed RNA polymerase subunit alpha [Rhizobium leguminosarum bv. viciae 3841] Length = 336
>gi|190891379|ref|YP_001977921.1| DNA-directed RNA polymerase protein, alpha subunit [Rhizobium etli CIAT 652] Length = 336
>gi|209548959|ref|YP_002280876.1| DNA-directed RNA polymerase subunit alpha [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 336
>gi|218516292|ref|ZP_03513132.1| DNA-directed RNA polymerase subunit alpha [Rhizobium etli 8C-3] Length = 336
>gi|241204189|ref|YP_002975285.1| DNA-directed RNA polymerase subunit alpha [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 336
>gi|119366712|sp|Q2K9J2|RPOA_RHIEC RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha Length = 336
>gi|119366713|sp|Q1MIB7|RPOA_RHIL3 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha Length = 336
>gi|238057757|sp|B5ZZ57|RPOA_RHILW RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha Length = 336
>gi|238692528|sp|B3PWU5|RPOA_RHIE6 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha Length = 336
>gi|86281431|gb|ABC90494.1| DNA-directed RNA polymerase alpha chain protein [Rhizobium etli CFN 42] Length = 336
>gi|115256212|emb|CAK07293.1| putative DNA-directed RNA polymerase alpha chain [Rhizobium leguminosarum bv. viciae 3841] Length = 336
>gi|190696658|gb|ACE90743.1| DNA-directed RNA polymerase protein, alpha subunit [Rhizobium etli CIAT 652] Length = 336
>gi|209534715|gb|ACI54650.1| DNA-directed RNA polymerase, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 336
>gi|240858079|gb|ACS55746.1| DNA-directed RNA polymerase, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 336
>gi|327189694|gb|EGE56841.1| DNA-directed RNA polymerase subunit alpha [Rhizobium etli CNPAF512] Length = 336
 Score =  494 bits (1273), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/339 (70%), Positives = 283/339 (83%), Gaps = 4/339 (1%)

Query: 1   MIQKNWQELIKPNNIEYIVLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAI 60
           MIQKNWQELIKPN +E+         R  ++AEPL RGF  TLGNALRRVL+SSLRGAA+
Sbjct: 1   MIQKNWQELIKPNKVEF---SSSSRTRATLVAEPLERGFGLTLGNALRRVLLSSLRGAAV 57

Query: 61  TAVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMSGDSHKRVTIFKRGPGVVTAGDIQ 120
           TAVQIDGVLHE SSI GV ED+TDI+LNIK I +KM GD  KR+ + K+GPGVVTAGDIQ
Sbjct: 58  TAVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDAKRMVVRKQGPGVVTAGDIQ 117

Query: 121 TVNDIEVLNPDHVICNLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALYSPI 180
           TV DIE+LNP+HVIC LD  A +RME TV+ G GYVPA+ +R E+ PIGLI +D+LYSP+
Sbjct: 118 TVGDIEILNPEHVICTLDEGAEIRMEFTVNNGKGYVPAERNRAEDAPIGLIPVDSLYSPV 177

Query: 181 KKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFINFEEPKKE 240
           KKVSY VE+ REGQVLDYDKL+MTI+TDGSITGED+VA A+RILQDQLG+F+NF+EP+KE
Sbjct: 178 KKVSYKVENTREGQVLDYDKLNMTIETDGSITGEDAVAFAARILQDQLGVFVNFDEPQKE 237

Query: 241 VKEDINVKSLPFNPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGR 300
            +E+  V  L FNPALLKKV+ELELSVRS NCL+ +NIVY+GDLIQ+TEA+MLR  NFGR
Sbjct: 238 TEEEA-VTELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGR 296

Query: 301 KSLVEIKGVLGTMGLFLGMNLPDWPPESIEELAKKYEDK 339
           KSL EIK VL +MGL LGM +P WPPE+IE+LAK+YED+
Sbjct: 297 KSLNEIKEVLASMGLHLGMEVPAWPPENIEDLAKRYEDQ 335