PSIBLAST alignment of GI: 254780237 and protein with PDB id: 1bdf
>gi|5107487|pdb|1BDF|A Chain A, Structure Of Escherichia Coli Rna Polymerase Alpha Subunit N-Terminal Domain Length = 235
>gi|5107488|pdb|1BDF|B Chain B, Structure Of Escherichia Coli Rna Polymerase Alpha Subunit N-Terminal Domain Length = 235
Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats.
Identities = 99/236 (41%), Positives = 152/236 (64%), Gaps = 7/236 (2%)
Query: 2 IQKNWQELIKPNNIEYIVLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAIT 61
+Q + E +KP ++ + + EPL RGF HTLGNALR +L+SS+ G A+T
Sbjct: 1 MQGSVTEFLKPRLVDIEQVSS---THAKVTLEPLERGFGHTLGNALRAILLSSMPGCAVT 57
Query: 62 AVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKMSGDSHKRVTIFKRGPGVVTAGDIQT 121
V+IDGVLHE S+ +GV ED+ +I+LN+KG+ +++ G +T+ K G G VTA DI
Sbjct: 58 EVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVTAADITH 117
Query: 122 VNDIEVLNPDHVICNL-DVDAVVRMELTVSKGHGYVPAK---HHRTENDPIGLITIDALY 177
D+E++ P HVIC+L D +A + M + V +G GYVPA H + PIG + +DA Y
Sbjct: 118 DGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIHSEEDERPIGRLLVDACY 177
Query: 178 SPIKKVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFIN 233
SP+++++Y VE+AR Q D DKL + ++T+G+I E+++ A+ IL +QL F++
Sbjct: 178 SPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVD 233