PSIBLAST alignment of GI: 254780237 and protein with PDB id: 1iw7
gi|21730337|pdb|1IW7|A Chain A, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 315
>gi|21730338|pdb|1IW7|B Chain B, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 315
Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats.
Identities = 111/305 (36%), Positives = 165/305 (54%), Gaps = 5/305 (1%)
Query: 17 YIVLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQIDGVLHEISSIK 76
+ + + EPL RGF TLGN LRR+L+SS+ G A+T+V I+ VLHE S+I
Sbjct: 10 VFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIP 69
Query: 77 GVHEDLTDIILNIKGINLKMSGDSHKRVT--IFKRGPGVVTAGDIQTVNDIEVLNPDHVI 134
GV ED+ +IILN+K + ++ S + VT + GP V A D V D+E++NPD I
Sbjct: 70 GVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHI 129
Query: 135 CNLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALYSPIKKVSYTVESAREGQ 194
L+ + ME+ V +G GYVPA+ H ++ I I +DA++SP+++V++ VE R GQ
Sbjct: 130 ATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDR-INAIPVDAVFSPVRRVAFQVEDTRLGQ 188
Query: 195 VLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFINFE--EPKKEVKEDINVKSLPF 252
D DKL++ I TDGS+T +++ A IL++ L F N + +
Sbjct: 189 RTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQAAAVAAPEEAKEPEAPPEQ 248
Query: 253 NPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGT 312
L +EEL LS R + L+ E I + L+ D+ + G +SL EIK L
Sbjct: 249 EEELDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEK 308
Query: 313 MGLFL 317
G L
Sbjct: 309 KGFTL 313