PSIBLAST alignment of GI: 254780237 and protein with PDB id: 1iw7

gi|21730337|pdb|1IW7|A Chain A, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 315
>gi|21730338|pdb|1IW7|B Chain B, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 315
 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 165/305 (54%), Gaps = 5/305 (1%)

Query: 17  YIVLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQIDGVLHEISSIK 76
              +  +       + EPL RGF  TLGN LRR+L+SS+ G A+T+V I+ VLHE S+I 
Sbjct: 10  VFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIP 69

Query: 77  GVHEDLTDIILNIKGINLKMSGDSHKRVT--IFKRGPGVVTAGDIQTVNDIEVLNPDHVI 134
           GV ED+ +IILN+K + ++    S + VT  +   GP  V A D   V D+E++NPD  I
Sbjct: 70  GVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHI 129

Query: 135 CNLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIGLITIDALYSPIKKVSYTVESAREGQ 194
             L+    + ME+ V +G GYVPA+ H  ++  I  I +DA++SP+++V++ VE  R GQ
Sbjct: 130 ATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDR-INAIPVDAVFSPVRRVAFQVEDTRLGQ 188

Query: 195 VLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFINFE--EPKKEVKEDINVKSLPF 252
             D DKL++ I TDGS+T  +++  A  IL++ L  F N +        +          
Sbjct: 189 RTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQAAAVAAPEEAKEPEAPPEQ 248

Query: 253 NPALLKKVEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGT 312
              L   +EEL LS R  + L+ E I  +  L+     D+  +   G +SL EIK  L  
Sbjct: 249 EEELDLPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEK 308

Query: 313 MGLFL 317
            G  L
Sbjct: 309 KGFTL 313