PSIBLAST alignment of GI: 254780237 and protein with PDB id: 3h0g

gi|256599717|pdb|3H0G|C Chain C, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 297
>gi|256599729|pdb|3H0G|O Chain O, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 297
 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 89/271 (32%), Gaps = 54/271 (19%)

Query: 43  LGNALRRVLMSSLRGAAITAVQID----GVLHEI---------------SSIKGVHEDLT 83
           + N+LRRV+++ +   AI  V+I+     +  E                     V  + T
Sbjct: 28  VANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRLGMIPLDSSNIDEPPPVGLEYT 87

Query: 84  DIILNIKGINLKMSGDSHKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDH--------VIC 135
                      K S +          G   + A D+   ++  + +P          +IC
Sbjct: 88  RNCD-CDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPILADPKSRGPLIC 146

Query: 136 NLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIGLIT--------------IDALYSPIK 181
            L  +  + +     KG     AK   T                        DA +   K
Sbjct: 147 KLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYDPWNKLQHTDYWFENDADAEWPKSK 206

Query: 182 KVSYTVESAREGQVLDYD----KLSMTIDTDGSITGEDSVALASRILQDQLGMFINFEEP 237
              +  E  REG+  ++     +  M +++ GSI   + +    RILQ++L + +   + 
Sbjct: 207 NADWE-EPPREGEPFNFQEEPRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRDLDE 265

Query: 238 KKEVKEDINVKSLPFNPALLKKVEELELSVR 268
           ++  +   N  ++  N        E+  S  
Sbjct: 266 EQPTQLSANELNMEEN-------AEMNWSPY 289