PSIBLAST alignment of GI: 254780237 and protein with PDB id: 3h0g
gi|256599717|pdb|3H0G|C Chain C, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 297
>gi|256599729|pdb|3H0G|O Chain O, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 297
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 46/271 (16%), Positives = 89/271 (32%), Gaps = 54/271 (19%)
Query: 43 LGNALRRVLMSSLRGAAITAVQID----GVLHEI---------------SSIKGVHEDLT 83
+ N+LRRV+++ + AI V+I+ + E V + T
Sbjct: 28 VANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRLGMIPLDSSNIDEPPPVGLEYT 87
Query: 84 DIILNIKGINLKMSGDSHKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDH--------VIC 135
K S + G + A D+ ++ + +P +IC
Sbjct: 88 RNCD-CDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPILADPKSRGPLIC 146
Query: 136 NLDVDAVVRMELTVSKGHGYVPAKHHRTENDPIGLIT--------------IDALYSPIK 181
L + + + KG AK T DA + K
Sbjct: 147 KLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYDPWNKLQHTDYWFENDADAEWPKSK 206
Query: 182 KVSYTVESAREGQVLDYD----KLSMTIDTDGSITGEDSVALASRILQDQLGMFINFEEP 237
+ E REG+ ++ + M +++ GSI + + RILQ++L + + +
Sbjct: 207 NADWE-EPPREGEPFNFQEEPRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRDLDE 265
Query: 238 KKEVKEDINVKSLPFNPALLKKVEELELSVR 268
++ + N ++ N E+ S
Sbjct: 266 EQPTQLSANELNMEEN-------AEMNWSPY 289