RPSBLAST alignment for GI: 254780237 and conserved domain: smart00662
>gnl|CDD|128908 smart00662, RPOLD, RNA polymerases D. DNA-directed RNA polymerase subunit D and bacterial alpha chain. Length = 224
Score = 182 bits (465), Expect = 1e-46
Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 35/224 (15%)
Query: 37 RGFAHTLGNALRRVLMSSLRGAAITAVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKM 96
+ TL NALRRVL+SS+ G A+T V+I+G + GV +++ L +K +
Sbjct: 7 EPYGLTLANALRRVLLSSVPGMAVTEVEIEG------NTSGVQDEVLAHRLGLKPLASDP 60
Query: 97 SGDSHKR--------------VTIFKRGPGVVTAGDIQTV--NDIEVLNPDHVICNLDVD 140
GD ++R +T+ +GPG VTAGD+++ D+E++NPD I L
Sbjct: 61 DGDEYQRDCECEEGCEKCSVTLTLDVKGPGEVTAGDLKSDSDPDVEIVNPDIPIAKLREG 120
Query: 141 AVVRMELTVSKGHGYVPAKHHRT---ENDPIGLITIDALYSPIKKVSYTVESAREGQVLD 197
+ +E KG GYV AK E I I +DA +SP+ +V+Y VE R Q D
Sbjct: 121 QELELEARAEKGRGYVHAKWSPVSTVEYRYIPRIPVDASFSPVDRVAYQVECPRVVQRTD 180
Query: 198 ----------YDKLSMTIDTDGSITGEDSVALASRILQDQLGMF 231
YDKL ++T+GS+ E++V A++IL+++L F
Sbjct: 181 CCRECDEGEEYDKLIFDVETNGSLKPEEAVLEAAKILKEKLEAF 224