RPSBLAST alignment for GI: 254780237 and conserved domain: smart00662

>gnl|CDD|128908 smart00662, RPOLD, RNA polymerases D. DNA-directed RNA polymerase subunit D and bacterial alpha chain. Length = 224
 Score =  182 bits (465), Expect = 1e-46
 Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 35/224 (15%)

Query: 37  RGFAHTLGNALRRVLMSSLRGAAITAVQIDGVLHEISSIKGVHEDLTDIILNIKGINLKM 96
             +  TL NALRRVL+SS+ G A+T V+I+G      +  GV +++    L +K +    
Sbjct: 7   EPYGLTLANALRRVLLSSVPGMAVTEVEIEG------NTSGVQDEVLAHRLGLKPLASDP 60

Query: 97  SGDSHKR--------------VTIFKRGPGVVTAGDIQTV--NDIEVLNPDHVICNLDVD 140
            GD ++R              +T+  +GPG VTAGD+++    D+E++NPD  I  L   
Sbjct: 61  DGDEYQRDCECEEGCEKCSVTLTLDVKGPGEVTAGDLKSDSDPDVEIVNPDIPIAKLREG 120

Query: 141 AVVRMELTVSKGHGYVPAKHHRT---ENDPIGLITIDALYSPIKKVSYTVESAREGQVLD 197
             + +E    KG GYV AK       E   I  I +DA +SP+ +V+Y VE  R  Q  D
Sbjct: 121 QELELEARAEKGRGYVHAKWSPVSTVEYRYIPRIPVDASFSPVDRVAYQVECPRVVQRTD 180

Query: 198 ----------YDKLSMTIDTDGSITGEDSVALASRILQDQLGMF 231
                     YDKL   ++T+GS+  E++V  A++IL+++L  F
Sbjct: 181 CCRECDEGEEYDKLIFDVETNGSLKPEEAVLEAAKILKEKLEAF 224