RPSBLAST alignment for GI: 254780237 and conserved domain: CHL00013

>gnl|CDD|176956 CHL00013, rpoA, RNA polymerase alpha subunit. Length = 327
 Score =  195 bits (499), Expect = 1e-50
 Identities = 105/307 (34%), Positives = 165/307 (53%), Gaps = 22/307 (7%)

Query: 31  IAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQIDGVLHEISSIKGVHEDLTDIILNIK 90
           I  PL +G A T+G ALRR L+  + G  IT  +I+GV HE S+I G+ E + +I+LN+K
Sbjct: 25  ILSPLMKGQADTIGIALRRALLGEIEGTCITRAKIEGVPHEYSTIPGIRESVLEILLNLK 84

Query: 91  GINLKMSGDSHKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDHVICNLDVDAVVRMELTVS 150
            I LK +    ++ +I  +GP  VTA DI     +E+++P   I  +     + +EL + 
Sbjct: 85  EIVLKSNLYGPQKASICVQGPKYVTAQDIILPPSVEIVDPTQHIATITEPIDLEIELKIE 144

Query: 151 KGHGYVPAKHHRTENDPIGLITIDALYSPIKKVSYTVESAREGQVLDYDKLSMTIDTDGS 210
           KG GY   +    +N   G   IDA++ P++ V+Y++ S   G     + L + I T+GS
Sbjct: 145 KGRGY---RLKTPKNFQDGSFPIDAVFMPVRNVNYSIHSYGNGNEKQ-EILFLEIWTNGS 200

Query: 211 ITGEDSVALASRILQDQLGMFINFEEP--KKEVKEDINVKSLPFNPALLKK--------- 259
           IT ++++  ASR L D    F++ EE   K E  E+       F+  L            
Sbjct: 201 ITPKEALHEASRNLIDLFIPFLHAEEENLKLENNENRVTLLFTFHDRLTDLKKNKKEIAL 260

Query: 260 ----VEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGL 315
               +E+LELSVR+ NCL+  NI  + DL+  ++ D+L++ NFG+KS    K VL  +  
Sbjct: 261 KQIFIEQLELSVRAYNCLKRANIHTLLDLLNYSQEDLLKIKNFGQKS---AKEVLEALQK 317

Query: 316 FLGMNLP 322
             G++LP
Sbjct: 318 RFGIDLP 324