RPSBLAST alignment for GI: 254780237 and conserved domain: CHL00013
>gnl|CDD|176956 CHL00013, rpoA, RNA polymerase alpha subunit. Length = 327
Score = 195 bits (499), Expect = 1e-50
Identities = 105/307 (34%), Positives = 165/307 (53%), Gaps = 22/307 (7%)
Query: 31 IAEPLPRGFAHTLGNALRRVLMSSLRGAAITAVQIDGVLHEISSIKGVHEDLTDIILNIK 90
I PL +G A T+G ALRR L+ + G IT +I+GV HE S+I G+ E + +I+LN+K
Sbjct: 25 ILSPLMKGQADTIGIALRRALLGEIEGTCITRAKIEGVPHEYSTIPGIRESVLEILLNLK 84
Query: 91 GINLKMSGDSHKRVTIFKRGPGVVTAGDIQTVNDIEVLNPDHVICNLDVDAVVRMELTVS 150
I LK + ++ +I +GP VTA DI +E+++P I + + +EL +
Sbjct: 85 EIVLKSNLYGPQKASICVQGPKYVTAQDIILPPSVEIVDPTQHIATITEPIDLEIELKIE 144
Query: 151 KGHGYVPAKHHRTENDPIGLITIDALYSPIKKVSYTVESAREGQVLDYDKLSMTIDTDGS 210
KG GY + +N G IDA++ P++ V+Y++ S G + L + I T+GS
Sbjct: 145 KGRGY---RLKTPKNFQDGSFPIDAVFMPVRNVNYSIHSYGNGNEKQ-EILFLEIWTNGS 200
Query: 211 ITGEDSVALASRILQDQLGMFINFEEP--KKEVKEDINVKSLPFNPALLKK--------- 259
IT ++++ ASR L D F++ EE K E E+ F+ L
Sbjct: 201 ITPKEALHEASRNLIDLFIPFLHAEEENLKLENNENRVTLLFTFHDRLTDLKKNKKEIAL 260
Query: 260 ----VEELELSVRSTNCLRGENIVYMGDLIQRTEADMLRMANFGRKSLVEIKGVLGTMGL 315
+E+LELSVR+ NCL+ NI + DL+ ++ D+L++ NFG+KS K VL +
Sbjct: 261 KQIFIEQLELSVRAYNCLKRANIHTLLDLLNYSQEDLLKIKNFGQKS---AKEVLEALQK 317
Query: 316 FLGMNLP 322
G++LP
Sbjct: 318 RFGIDLP 324