RPSBLAST alignment of GI: 254780237 and SCOP domain: d1bdfa1

Alignment

>d1bdfa1 d.74.3.1 (A:2-52,A:179-232) RNA polymerase alpha {Escherichia coli [TaxId: 562]} Length = 105

 Score = 90.7 bits (225), Expect = 2e-19
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 123 NDIEVLNPDHVICNLDVDAVVRMEL-TVSKGHGYVPAKHHRTENDPIGLITIDALYSPIK 181
           +  E L P  V          ++ L  + +G G+      R          + +   P++
Sbjct: 3   SVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRA--------ILLSSMPPVE 54

Query: 182 KVSYTVESAREGQVLDYDKLSMTIDTDGSITGEDSVALASRILQDQLGMFI 232
           +++Y VE+AR  Q  D DKL + ++T+G+I  E+++  A+ IL +QL  F+
Sbjct: 55  RIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV 105

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DCoH-like
superfamily: RBP11-like subunits of RNA polymerase
family: RNA polymerase alpha subunit dimerisation domain
domain: RNA polymerase alpha
species: Escherichia coli [TaxId: 562]