RPSBLAST alignment of GI: 254780237 and SCOP domain: d1bdfa1

Alignment

>d1bdfa1 d.74.3.1 (A:2-52,A:179-232) RNA polymerase alpha {Escherichia coli [TaxId: 562]} Length = 105

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 3  QKNWQELIKPNNIEYIVLGQEEENRTLMIAEPLPRGFAHTLGNALRRVLMSSLRGAAITA 62
          Q +  E +KP  ++   + Q       +  EPL RGF HTLGNALR +L+SS+      A
Sbjct: 1  QGSVTEFLKPRLVD---IEQVSSTHAKVTLEPLERGFGHTLGNALRAILLSSMPPVERIA 57

Query: 63 VQIDGVLHEISSIKGVHEDLTDIILNIK 90
            ++    E         DL  +++ ++
Sbjct: 58 YNVEAARVEQR------TDLDKLVIEME 79

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DCoH-like
superfamily: RBP11-like subunits of RNA polymerase
family: RNA polymerase alpha subunit dimerisation domain
domain: RNA polymerase alpha
species: Escherichia coli [TaxId: 562]