HHsearch alignment for GI: 254780238 and conserved domain: COG0100

>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=5.6e-45  Score=296.29  Aligned_cols=129  Identities=53%  Similarity=0.882  Sum_probs=121.2

Q ss_pred             CCCCCCCCCCCEEEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             98876443343001225218999917987799997089988997404443557754335203789999999999986981
Q gi|254780238|r    1 MPKSPSRIRNRERKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMS   80 (129)
Q Consensus         1 m~~~~~~~~~k~~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~   80 (129)
T Consensus         1 ~~~~~~~~~~~~~~~i~~GvahI~asfNNTivtitD~~Gn~i~wassG~~gfk~~rk~tpyAA~~aa~~aa~~a~e~Gi~   80 (129)
T COG0100           1 MAKAKARKKKKVKKNIADGVAHIHASFNNTIVTITDLTGNVIIWASSGGMGFKGSRKSTPYAAQLAAEDAAKKAKEHGIK   80 (129)
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             97533343300012321315899726788589740789988999704762474788888689999999999999970854


Q ss_pred             EEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             9999997799867888778763693699999638898888688886789
Q gi|254780238|r   81 SLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRRI  129 (129)
Q Consensus        81 ~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~RRi  129 (129)
T Consensus        81 ~v~v~vkgpG~GreaAiraL~~ag~~i~~I~DvTPiphnG~Rppk~RR~  129 (129)
T COG0100          81 SVEVKVKGPGPGREAAIRALAAAGLKITRIEDVTPIPHNGCRPPKRRRV  129 (129)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             7999996899758999999987365587888868778899789887789