HHsearch alignment for GI: 254780238 and conserved domain: PTZ00090
>PTZ00090 40S ribosomal protein S11; Provisional.
Probab=99.18 E-value=4.3e-11 Score=88.73 Aligned_cols=109 Identities=22% Similarity=0.325 Sum_probs=97.6
Q ss_pred EEEEEECCCCEEEEEECCCC--CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH
Q ss_conf 89999179877999970899--8899740444355775433520378999999999998698199999977998678887
Q gi|254780238|r 20 RAHVVSTFNNTRITITDPHG--NTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAGRDSAL 97 (129)
Q Consensus 20 iihI~~t~NNTiitlTd~~G--n~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~GR~~~i 97 (129)
T Consensus 101 ~~V~ttsKNNvhaqvvNkS~nyrTvfgsfAGnVG~~K~~qq~~kcAyRIGeniAkKcrRLGif~vdvkFRrim-Rve~vl 179 (214)
T PTZ00090 101 MLVLTTSKNNVHAQLVNRSKNYKTVFGSFAGNVGFTKKLQQSERCAYRIGENIAKKCKRLGIFAVDVKFRRIM-RVETVL 179 (214)
T ss_pred EEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHH-HHHHHH
T ss_conf 9999805774440110044440256531154210678876300689999889999988728221104689999-999999
Q ss_pred HHHHHCCCEEEEEEECCCCCC---CCCCCCCCCCC
Q ss_conf 787636936999996388988---88688886789
Q gi|254780238|r 98 RALRAIGFTIVSICDVTMIAH---NGCRPRKRRRI 129 (129)
Q Consensus 98 k~l~~~glkI~~I~D~T~ip~---nGcRp~K~RRi 129 (129)
T Consensus 180 qa~~a~~l~v~q~iheprlpk~g~n~~~pr~rrrv 214 (214)
T PTZ00090 180 QAFYANGLQVTQLIHEPRLPKTGLNSVRPRRRRRV 214 (214)
T ss_pred HHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99997376246552377788667665684302469