HHsearch alignment for GI: 254780238 and conserved domain: PTZ00090

>PTZ00090 40S ribosomal protein S11; Provisional.
Probab=99.18  E-value=4.3e-11  Score=88.73  Aligned_cols=109  Identities=22%  Similarity=0.325  Sum_probs=97.6

Q ss_pred             EEEEEECCCCEEEEEECCCC--CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH
Q ss_conf             89999179877999970899--8899740444355775433520378999999999998698199999977998678887
Q gi|254780238|r   20 RAHVVSTFNNTRITITDPHG--NTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAGRDSAL   97 (129)
Q Consensus        20 iihI~~t~NNTiitlTd~~G--n~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~GR~~~i   97 (129)
T Consensus       101 ~~V~ttsKNNvhaqvvNkS~nyrTvfgsfAGnVG~~K~~qq~~kcAyRIGeniAkKcrRLGif~vdvkFRrim-Rve~vl  179 (214)
T PTZ00090        101 MLVLTTSKNNVHAQLVNRSKNYKTVFGSFAGNVGFTKKLQQSERCAYRIGENIAKKCKRLGIFAVDVKFRRIM-RVETVL  179 (214)
T ss_pred             EEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHH-HHHHHH
T ss_conf             9999805774440110044440256531154210678876300689999889999988728221104689999-999999


Q ss_pred             HHHHHCCCEEEEEEECCCCCC---CCCCCCCCCCC
Q ss_conf             787636936999996388988---88688886789
Q gi|254780238|r   98 RALRAIGFTIVSICDVTMIAH---NGCRPRKRRRI  129 (129)
Q Consensus        98 k~l~~~glkI~~I~D~T~ip~---nGcRp~K~RRi  129 (129)
T Consensus       180 qa~~a~~l~v~q~iheprlpk~g~n~~~pr~rrrv  214 (214)
T PTZ00090        180 QAFYANGLQVTQLIHEPRLPKTGLNSVRPRRRRRV  214 (214)
T ss_pred             HHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99997376246552377788667665684302469